Abstract
Autism spectrum disorder (ASD) is a neurodevelopmental disorder with complex clinical manifestations that arise between 18 and 36 months of age. Social interaction deficiencies, a restricted range of interests, and repetitive stereotyped behaviors are characteristics which are sometimes difficult to detect early. Several studies show that microRNAs (miRs/miRNAs) are strongly implicated in the development of the disorder and affect the expression of genes related to different neurological pathways involved in ASD. The present systematic review and meta-analysis addresses the current status of miRNA studies in different body fluids and the most frequently dysregulated miRNAs in patients with ASD. We used a combined approach to summarize miRNA fold changes in different studies using the mean values. In addition, we summarized p values for differential miRNA expression using the Fisher method. Our literature search yielded a total of 133 relevant articles, 27 of which were selected for qualitative analysis based on the inclusion and exclusion criteria, and 16 studies evaluating miRNAs whose data were completely reported were ultimately included in the meta-analysis. The most frequently dysregulated miRNAs across the analyzed studies were miR-451a, miR-144-3p, miR-23b, miR-106b, miR150-5p, miR320a, miR92a-2-5p, and miR486-3p. Among the most dysregulated miRNAs in individuals with ASD, miR-451a is the most relevant to clinical practice and is associated with impaired social interaction. Other miRNAs, including miR19a-3p, miR-494, miR-142-3p, miR-3687, and miR-27a-3p, are differentially expressed in various tissues and body fluids of patients with ASD. Therefore, all these miRNAs can be considered candidates for ASD biomarkers. Saliva may be the optimal biological fluid for miRNA measurements, because it is easy to collect from children compared to other biological fluids.
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Introduction
Autism spectrum disorder (ASD) is a neurodevelopmental disorder with a prevalence of approximately 1.5% in developed countries [1]. The aetiology of ASD has not been fully elucidated, since the disorder exhibits wide genetic variability that triggers both behavioral and phenotypic alterations at the level of brain structures. The clinical manifestations are complex and emerge between 18 and 36 months of age. Social interaction deficiencies, a restricted range of interests, and repetitive stereotyped behaviors are the main characteristics of ASD, which are sometimes difficult to detect early [2]. Currently, the diagnosis is based on interviews with parents or caregivers using tools such as the Modified Checklist for Autism in Young Children, Revised (M-CHAT-R) [3], the Autism Diagnostic Observation Schedule (ADOS) [4], and the Autism Diagnostic Interview-Revised (ADI-R) [5]. Although the diagnostic reliability of these interviews is high, these tools require an evaluator with experience and specific training.
Implementation of an intervention before the age of two can improve the prognosis. Early intervention can also lead to better neuronal maturation [6]. Therefore, a biomarker for early detection would be a good diagnostic supplement [7, 8]. Several biomarkers have been proposed for ASD detection, including functional connectivity observed on magnetic resonance imaging and calculated using machine learning algorithms [9], the genetic load [10], the increased CSF volume [11], transcriptomic signatures in blood, and levels of altered cytokines; however, more studies are required to corroborate whether these items can serve as ideal biomarkers [12].
The non-coding RNAs (ncRNAs) are recently emerging as novel promising biomarkers in medicine with great prognostic and predictive potential [13]. MiRNAs, the most well-studied ncRNA, are short non-coding RNAs of approximately 18–24 nucleotides that are responsible for regulating gene expression through epigenetic mechanisms [14] in approximately 60% of human genes [15]. As will be focused on this review, for ASD diagnoses, microRNAs (miRs/miRNAs) are types of ncRNAs which have become an important research focus last years [15,16,17].
MiRNAs, the most well-studied ncRNA, are short non-coding RNAs of approximately 18–24 nucleotides that are responsible for regulating gene expression through epigenetic mechanisms [14] in approximately 60% of human genes [15]. In addition, miRNAs are heavily involved in neuronal plasticity and neuronal development [18], and their deregulation generates diverse neurological alterations, such as ASD. To be an accessible biomarker, miRNA should be able to be isolated using non-invasive protocols, easy to quantify, specific to the disorder, able to be translated from systems to human models [19] and reliable as an early indicator of disease onset [20]. Various investigations of miRNAs as biomarkers for ASD have focused on biogenesis and measurement in different biofluids or tissues for detection [21], such as lymphoblastoid cells [22, 23], postmortem cerebral cortex tissues [2], serum or blood plasma [24], olfactory mucosa cells [18], and saliva [16].
Based on this knowledge, we conducted a systematic review to (1) identify which miRNAs can be used as biomarkers to support current diagnostic methods, (2) determine which body fluid may be ideal for miRNA measurement in children, and (3) clarify relationships between miRNAs and the genetic burden of ASD.
Methodology
The systematic review was conducted in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) statement [25]. It also followed a protocol registered in PROSPERO CRD42021225956.
Search strategy
We searched the PubMed, Scopus, and Web of Science databases from 2010 until March 2021 utilizing Medical Subject Headings (MeSH) related to (autism spectrum disorder) AND (microRNA). We also cross-referenced relevant studies and previous reviews and contacted study authors and experts for data clarification.
Eligibility
To achieve a concise and precise review of the role of miRNAs in ASD, some criteria were selected to systematize the search in the different databases and thus include only articles related to the subject. Inclusion criteria: (i) Studies on ASD patients; (ii) Studies in which ASD was diagnosed according to either the ADOS, ADI-R or any validated instrument; (iii) Studies measuring miRNAs in any peripheral tissue from patients with ASD; (iv) Studies measuring miRNAs in CNS from patients with ASD (iv) Studies with a control group. Exclusion criteria: (i) ASD studies focusing on biomarkers other than miRNAs; (ii) Clinical cases reports; (iii) Studies conducted 11 or more years ago; (iv) Studies conducted in languages other than English; (v) Review articles; and (vi) Studies conducted on animals.
Study selection
Three independent reviewers (KGT, NGT, and GPB) screened titles and abstracts to identify studies meeting the inclusion criteria outlined above using Rayyan [26] software. The same reviewers then reviewed the full texts of eligible articles, and the final list of included articles was established through consensus. The Kappa index was 0.931. Disagreements regarding the eligibility of studies were resolved through discussions with two additional reviewers (SGC and CCB).
Meta-analytic approach
We implemented a meta-analytic approach to combine the differential gene expression results of the included studies. After study selection, the reviewers used a predefined spreadsheet to extract all relevant data from the included studies. The extracted data included general publication information and detailed information about the miRNAs analyzed in each study and their association with severity and clinical manifestations (impaired social behavior, repetitive behaviors, intelligence, memory and learning, and language impairment). We extracted fold change (fc) data or log2-fc values and their p values and confidence intervals when reported by the authors. We identified miRNAs that were assessed and reported in two or more studies to combine their log2-fc values. We used the R package MetaVolcanoR, which implements three strategies to combine and summarize differential gene expression data from different studies: a random-effects model approach, a combined p value approach, and a vote-counting approach [27].
Quality assessment
The QUADAS-2 tool was developed to assess the quality of studies on diagnostic tests included in systematic reviews [28]. QUADAS-2 analyzes four domains: (1) patient selection, (2) index tests, (3) reference tests, and (4) flow and times. Each domain is evaluated in terms of its risk of bias, and the first three domains are also evaluated for their applicability. For more details, please see the supplementary documents.
Results
The literature search yielded a total of 133 articles. Then, 27 articles were selected for qualitative analysis based on the inclusion and exclusion criteria. Out of the 27, 16 studies were ultimately included in the meta-analysis and 218 miRNAs were identified (Fig. 1).
In all studies (Tables 1, 2), miRNA measurements were performed in ASD patients and compared with miRNA measurements in a control group. The ages of the patients and controls ranged between 2 and 81 years. miRNA was measured in lymphoblastoid cell lines in three studies [14, 22, 29], five studies measured miRNA in postmortem cerebral cortex tissues [2, 15, 30,31,32], one study used cells from the olfactory mucosa [18], thirteen studies used serum [7, 19, 24, 33,34,35,36,37,38,39,40,41,42], and five studies used saliva [8, 16, 43,44,45]. A recent narrative review [46] found that the miR-151a, miR-146a, and miR-27a-30 are dysregulated in people with ASD and are replicated in more than one tissue.
Although 218 miRNAs were identified across the 16 studies included in the meta-analysis, only one (miR-451) was associated with a clinical manifestation of ASD in more than one study. Two studies [31, 45] reported that miR-451 is associated with impaired social interaction, one study [43] reported that miR-106 family is associated with repetitive behaviors, one study [41] reported that miR-486-3p is associated with intelligence, one study [33] reported that miR-140-3p is associated with memory and learning, and no studies reported that any miRNA was associated with language impairment.
Regarding diagnoses, all studies used certain validated instruments to diagnose autism, including the ADOS, ADI-R-R, DSM, M-CHAT, and CARS. Two studies concluded that miRNAs are associated with severity. The expression of miR-6126 was significantly negative correlated with severity of the Social Response Scale (SRS) in adults with high functioning ASD [37] and miR-106a showed a positive correlation with autism severity evaluated by Childhood Autism Rating Scale (CARS) [42] in children aged under 14.
For our meta-analytic approach, we included 16 studies and eight miRNAs (451-a, 144-3p, 23b, 106b, 150-5p, 320a, 92a-2-5p, and 486-3p) whose data were reported in more than one study. Since no studies reported the confidence interval for fc, we were unable to conduct all planned analyses. We used a combined approach to summarize the fold changes of the miRNAs in different studies according to the mean values. In addition, we summarized the p values for differential miRNA expression using the Fisher method. The combined results for the eight miRNAs are shown in Table 3 and Fig. 2a, b shows the 16 studies included in the meta-analysis and the fold change of the expression in every miRNA. Each circle represents a miRNA. 218 miRNAs were identified across 16 studies but only 8 miRNAs were repeated in more than one study. Figure 3 summarizes all the target genes of the analyzed miRNAs and shows the miRNAs related to different clinical manifestations of ASD. Finally, Table 4 shows target genes of the analyzed miRNAs; and Fig. S1. Quality assessment of individual studies is done using QUADAS tool.
Discussion
This review summarizes findings across 27 trials conducted in humans. To our knowledge, this is the first systematic review and meta-analysis of dysregulated miRNAs in ASD, their associations with ASD clinical manifestations, and miRNA measurement in biofluids from individuals with ASD. (i) The most frequently dysregulated miRNAs in patients with ASD were miR-451a, miR-144-3p, miR-23b, miR-106b, 150-5p, 320a, 92a-2-5p, and 486-3p, (ii) miR-451 is one of the most frequently dysregulated miRNAs and is the only associated with impaired social interaction in more than one study. (iii) miR-451 has also been isolated in saliva and may be the most promising biofluid for miRNA measurement. (iv) miRNA 106 family is also one of the most frequently dysregulated miRNAs and is associated with repetitive behaviors in one of the studies. (v) miRNAs are associated with genes related to ASD.
Although behavioral signs of ASD are present in many cases by the age of 18 months, ASD is not typically diagnosed before 3 to 4 years of age. To date, the only means to diagnose ASD is by observing children’s development through neurodevelopmental evaluations. No biological marker allows detection of the disease from birth; therefore, one of the current challenges for researchers is to determine whether miRNAs can truly be used as biomarkers to facilitate ASD diagnosis. We found that although research on miRNAs for the diagnosis of ASD started 12 years ago, at present, no pattern of miRNAs specific to ASD clinical levels of severity has been identified, and specific sets of miRNA do not reveal a pattern, rather than big data emergent assessment across all miRNA. Only one paper [43] 2020 suggests that there is a specific pattern. MiRNA measurement in different body fluids, such as blood or saliva, may be useful for comparing the levels of a specific miRNA to control levels, which can be applied to the search for a biological marker of ASD.
On the other hand, although transcriptomic or genetic analysis can be performed from birth, ASD is a disease with a heterogeneous genetic component, and no specific gene is universally affected in the entire population with ASD; therefore, performing a genetic or transcriptomic analysis is not feasible. However, as miRNAs are epigenetic modulators, the study of epigenetics can help identify one or more specific miRNAs that can be used as biomarkers.
An advantage of circulating miRNAs is that they are highly stable in the presence of RNases, resist pH changes, remain viable after prolonged storage, and resist freeze–thaw cycles [21]. Notably, miRNAs expressed in brain tissues are functionally or physiologically related to the physiopathology of ASD. Additionally, miRNAs in blood or saliva can reflect brain miRNA levels [36] and may be specific biomarkers for the diagnosis of ASD.
Frequently dysregulated miRNAs
The most frequently dysregulated miRNAs include miR-451a, miR-144-3p, miR-23b, and miR-106b (see Table 4). Additionally, miRNAs, including miR-16-2, miR-16-5p, miR-495, miR-148b, miR-326, miR-139, miR-199b, miR19a-3p, miR-494, miR-142-3p, miR-3687, and miR-27a-3p, are differentially expressed in various tissues and body fluids in patients with ASD. Among the miRNAs that were reported as dysregulated but excluded from the meta-analyses because there was not enough data available across studies are miR-140-3p, miR-34c-5p, miR-483-3p, miR-199a-5p, miR-142-5p, miR-142-3p, miR-21-5p, miR-6126 and miR-106a-5p, miR-146a, miR-193a, miR-181a, miR-155-5p, miR-483-3p, miR-34b-3p, miR-29b, miR141-3p, let7b-5p, and miR165p, which also induce the regulation of genes related to ASD.
Although several studies with very small populations identified different dysregulated miRNAs in isolation, other studies with large and representative samples [43] have detected alterations in several miRNAs whose dysregulation appears concurrently and have established an algorithm for four miRNAs (miR-28-3p, miR-151-a-3p, miR-148a-5p, miR-125b-2-3p) to differentiate children with ASD from healthy individuals and ASD from other developmental disorders. MiR-125b-2-3p and miR-151a-3p were found to be associated with ASD features in the ADOS assessment. This algorithm demonstrated a sensitivity of 89% and a specificity of 32%.
miRNA and the genetic load in ASD-associated syndromes
Dysregulation of miRNAs between families is also evident. Ozkul et al. [38] identified a group of miRNAs (miR-19a-3p, miR-361-5p, miR-3613-3p, miR-150-5p, miR-126-3p and miR-499a-5) that were profoundly decreased in patients with ASD and moderately decreased in their relatives who did not develop the disease compared to nongenetically related healthy controls, implying a potential heritability pattern in which the most serious phenotype of ASD has the lowest levels of miRNAs, as observed in children with ASD, and another phenotype in which the disease does not emerge and the levels of miRNAs are moderately low, as observed in the parents and siblings of patients with ASD.
Rett syndrome is a monogenic disorder linked to the X chromosome and is caused by mutations in the MECP2 gene, which prevent its binding to methylated DNA, thus repressing gene translation and consequently the development of autistic behavior. MiR-199 exerts epigenetic regulation on MECP2 [39]. In addition, miR-132 also targets this gene [40], corroborating that miRNAs can play an important role in gene regulation. Peripheral blood studies show that miR-140-3p is differentially upregulated in patients with ASD compared to controls and in patients suffering from Tourette syndrome and ASD. Therefore, miR-140-3p may be a candidate biomarker for the differential diagnosis of ASD [33]. The FMR1 gene is widely expressed in neurons and is regulated by 14 miRNAs that are dysregulated in ASD [44]. This gene is altered in fragile X syndrome, which causes intellectual disability, and 40% of patients with this disease meet the diagnostic criteria for ASD.
Hormones and epigenetic mechanisms
miRNAs, as epigenetic modulators, affect the protein levels of the target mRNAs without modifying the gene sequences. Moreover, miRNA can also be regulated by epigenetic modifications [31, 47]. Therefore, epigenetics could play a role in dysregulation of miRNAs. Previous studies have found a dysregulation in methylation and acetylation patterns of miRNAs in the brain of humans with ASD. Mor et al. [31] showed that dysregulated miRNAs target biological pathways and specific genes, modifying their expression levels, that are highly relevant to the biology of autism. An interesting example is the oxytocin receptor (OXTR) gene, which codified for the receptor for the hormone and neurotransmitter oxytocin. OXTR acts as a vascular regulator or an inducer of uterine contractions during parturition. However, in the central nervous system [48,49,50], OXTR is associated with roles in social, cognitive, and emotional behavior. Regarding these functions, perturbations in OXTR have been implicated in subpopulations of individuals with ASD, including Asperger’s syndrome.
miR-142 has important roles in the dopaminergic and monoamine pathways in the brain. Moreover, this miRNA can also target OXTR gene and modulate their expression. Mor et al. [31] evidenced that epigenetics plays a role in dysregulation of miR-142 in the brain of ASD patients. Particularly, they found a hypomethylation in five CpG sites in the promoter region of the gene coding for miR-142, which correlates with elevated levels of miR-142, resulting in effects on OXTR gene expression that may favor the pathogenesis of ASD.
As epigenetic modulator, miR-142-5p negatively regulates the transcription of monoamine oxidase, thus influencing the metabolism of neurotransmitters such as serotonin and dopamine. Moreover, miR-142-5p targets and decreases the translation of dopamine D1 receptors. Therefore, this miRNA has important functions in the dopaminergic and monoamine pathways of the brain that are strongly related to ASD. In this line, miR-142-5p was found to be upregulated in patients with ASD and may be involved in the degradation of HDAC2 mRNA, generating alterations in cell differentiation and proliferation [31].
Neuronal maturation and ASD
ASD is characterized by its association with neuronal maturation, neuronal plasticity, neurogenesis, and neuronal functions [41]. A gene associated with stabilization of the neuronal cytoskeleton (MAPT) is a target of miR-34c-5p, which inhibits its expression and generates effects on neuronal maturation [39].
The studies by Nguyen et al. [32] show that miR-146a overexpression in patients with ASD induces negative regulation of the LIN28B gene, which encodes a protein whose function is to maintain neural progenitors in an early stage of neuroblast proliferation. Additionally, miR-146a participates in negative regulation of CDKN1A, CDKN3, and CDK1, which encode proteins responsible for controlling the duration of the G1 phase during the cell cycle and the balance between the maintenance of progenitor cells and the emergence of differentiated neurons, which may be involved in the pathophysiology of ASD.
Social interaction and miRNAs
One of the functions of oxytocin is activation of the OXRT receptor, which, in the central nervous system, is mainly related to the biological signals of impaired social interaction. Overexpression of miR-21-5p and miR-451a is correlated with elevated OXRT mRNA expression, and, in turn, miR21-5p expression is correlated with low levels of the OXRT receptor. This hypothesis suggests that miR-21-5p inhibits translation of OXRT [31]. In addition, miR-6126 is closely related to oxytocin signaling pathways [37]. Changes induced in the OXRT pathway either by miRNA or by single-nucleotide polymorphisms have been associated with ASD, particularly in patients with Asperger’s syndrome. The deregulation of miR-21-5p, miR-451a and miR-6126 is related to alterations in social interactions, which are characteristic of ASD [31].
Repetitive behaviors
Ten miRNAs [43] are related to the manifestation of restricted and repetitive behaviors in patients with ASD, highlighting miR-106a-5p, which is responsible for the regulation of genes that are candidates for ASD (SEMA5A, NTNG1, SRGAP3, and MAPK1). Therefore, the dysregulation of miR-106a-5p can target transcripts that are related to brain development and lead to restricted and repetitive behaviors.
MicroRNAs involved in immunity in ASD
Neuroimmune interactions can originate during embryogenesis. Accordingly, children with ASD present altered immune responses, including altered cytokine TH1/TH2 profiles, low NK activity, chronic neuroinflammation generated by glutamatergic excitotoxicity and decreased GABAergic signals, and imbalances in serum immunoglobulins.
The excitatory–inhibitory imbalance hypothesis postulates dysregulation of the GABA and glutamate neurotransmission is associated with deficits in individuals with ASD [51]. According to this theory, the imbalanced neurotransmission results in increased noise and hyperexcitability in the cerebral cortex of these patients. Later, Blaylock and Strunecka postulated a link between perturbed glutamatergic neurotransmission and pro-inflammatory changes in the ASD brain. The author introduced the term “immunoexcitotoxicity’ to describe neuronal injury hypothesized to result from microglial activation in ASD brain, since chronic activation of microglia derives in a predominant neurotoxic effect on the brain, with excitotoxic levels of glutamate being secreted [52].
In the peripheral blood of patients with ASD, miR-34c-5p, which targets ZAP70, gene implicated in lymphocyte activation and NK acyivity, is profoundly dysregulated, reflecting a decrease in the CD4 + population and an imbalance of the Th1/Th2 subsets toward Th2 [39].
The cellular and differentiation functions of macrophages and monocytes, lymphocytes, and NK are partly regulated by miRNAs; for example, miR-181a was identified in patients with ASD and decreased IL-B and high IL-10 profiles in the studies performed by Jyonouchi et al. [24, 35]. These studies showed a decrease in this miRNA. MiR-181a was also determined to directly regulate the inflammatory response mediated by macrophages and monocytes through negative regulation of pro-inflammatory cytokines and suppression of PTEN-related signaling pathways, thus affecting regulatory T-cell differentiation as well as mitochondrial functions. Therefore, IL-B and IL-10 profiles together with miRNA levels may be biomarkers for immune-mediated inflammation in ASD. Moreover, recent research [29] found that all miR-181 family members, TNFa levels and NK profiles are dysregulated in ASD.
MicroRNAs, intelligence, learning, language, and memory in ASD
Yu et al. [41] demonstrated that miR-483-3p is dysregulated in ASD patients, leading to changes in the expression of c-Fos and Arc, which have an effect on dendritic and synaptic development, and thus contributing to the pathology of ASD, specifically impairments in intelligence and behavior. The study by Hicks et al. [44], which involved 14 miRNAs as possible biomarkers of ASD, shows that these miRNAs are expressed in different areas of the brain at different childhood ages. Analysis of the genes targeted by these miRNAs highlights the Forkhead P2 box protein (FOXP2), which has been heavily implicated in speech and language disorders.
Mutations in this gene result in a very characteristic verbal apraxia of fragile X Syndrome. While verbal apraxia is typically found in fragile X Syndrome, this alteration is also a hallmark of ASD. Interestingly, about 40% of the children with Fragile X Syndrome meet the criteria for ASD [44]. The regulatory network mediated by miR-140-3p plays a role in the CNS, and its dysregulation leads to alteration of CD38 gene, which is involved in learning, postnatal glial development, and hippocampal-dependent memory [33]. Mir-34b-3p, which is also dysregulated in patients with ASD, is related to neuronal development and long-term memory [34]. Therefore, these miRNAs, which are dysregulated in patients with ASD and physiologically related to the disease, are good biomarker candidates for ASD.
Biofluids for microRNA measurement
Expression of most miRNAs takes place within the cells themselves in every cerebral region. Nonetheless, several miRNAs, known as circulating miRNAs, have been found in human biological fluids like saliva, urine, blood, or cerebrospinal fluid [53]. Up to today's date, the known ways of secretion of circulating miRNAs are the following ones: (1) damaged cells, due to apoptosis or necrosis, which produce a passive secretion; (2) usage of extracellular vesicles to create an active secretion; (3) usage of RNA-binding protein-dependent pathways to generate an active secretion [54]. The most promising and advantageous biofluid in ASD, regarding the number of detected circulating miRNAs, is the saliva above the others.
It is available on demand and is quickly renewed in most adults, adolescents, and healthy children. It is also inexpensive to obtain, and collection is fast [55]. Initially, lymphoblastoid cells and cerebral cortex tissues were used for miRNA measurement. However, lymphoblastoid cells are not an ideal sample for determining the levels of miRNAs. The physiological relevance of miRNA expression in lymphoblastoid cell cultures raises methodological concerns [43] due to controversies regarding whether they are relevant indicators of neuronal tissue. Nevertheless, an unlimited amount of miRNA can be collected from these tissues [22]. In patients with ASD, sample collection can be complicated, since they can develop irritability with body contact and with some disturbances that arise in children’s daily lives [56]. Blood extraction is complicated, and preanalytical phase errors such as improper sample collection could occur. In addition, blood extraction is painful, requires specific personnel, and can generate anxiety and physical malaise [55]. Postmortem cerebral cortex tissues may be an ideal sample for studying and measuring miRNA considering that 70% of miRNAs are synthesized in the brain. However, postmortem samples of the cerebral cortex are generally taken from adults, which limits related analyses, since miRNA levels may vary considerably between childhood and adulthood, and the goal in the future is to develop a technique that allows early diagnosis [57].
Strengths and limitations
Some limitations should be noted, first, we were not able to accurately analyze all microRNAs, since there was not enough data available across studies. In particular, only 16 of 27 studies in the review could be included in the meta-analysis as the others had incomplete data for confidence intervals for the fc of every miRNA. Second, the studies used different metrics to statistically analyze whether a certain microRNA is increased or decreased in ASD patients compared to the negative control, so many studies that showed very promising results had to be excluded as we did not find a common variable that could be analyzed; and third, although 16 studies were included in the meta-analysis, not all studies choose the same microRNA; as a result, some studies that reported FC value had to be excluded as there was no other study that analyzed the same microRNA for fair comparison. Finally, no raw data were available in most studies.
We believe the main strength of our study is the disclosing of concrete clinical implications that may contribute to a better knowledge on the relationship between miRNAs and ASD. Of particular importance is the finding that the variability in both the miRNAs chosen and the metrics used for analyses in most studies to date highlights the need to establish protocols to compare consistent results. It is noteworthy that 218 miRNAs were identified across the 16 meta-analyzed studies, 8 studies were comparable, and only one was able to replicate the results in terms of clinical manifestations.
Conclusion
The most frequently dysregulated miRNAs across the analyzed studies were miR-451a, miR-144-3p, miR-23b, miR-106b, miR150-5p, miR320a, miR92a-2-5p, and miR486-3p. Therefore, all these miRNAs can be considered candidates for ASD biomarkers. Among the most dysregulated miRNAs in individuals with ASD, miR-451a is the most relevant to clinical practice and is associated with impaired social interaction in patients with ASD. Saliva may be the optimal biological fluid for miRNA measurement, because it is easy to obtain from children compared to other biological fluids. Future research should be focused on exploring more specific clinical outcomes.
Data availability
The datasets generated for this study are available on request to the corresponding author.
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Acknowledgements
The authors wish to express their gratitude to Raúl Gallego Juarez designer who improved our Fig. 3 and American Journal Experts for the English language editing of the article.
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Funding for open access publishing: Universidad de Sevilla/CBUA. This research did not receive any specific grant from funding agencies in the public, commercial, or not-for-profit sectors. NG-T received funds under Rio Hortega contract CM20/00015 with the Carlos III Health Institute. SG-C received funds under Sara Borrell contract CD19_00183 with the Carlos III Health Institute.
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NGT, MRV, KGT, and BCF conceived and designed the study; KGT, GPB, and CCB collected the data; NGT, HOM, SGC, and MCR contributed data or analysis tool; NGT and HOM performed the analysis; NGT, SGC, KGT, and DGG wrote the first draft; all authors review the final version of the manuscript.
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Garrido-Torres, N., Guzmán-Torres, K., García-Cerro, S. et al. miRNAs as biomarkers of autism spectrum disorder: a systematic review and meta-analysis. Eur Child Adolesc Psychiatry (2023). https://doi.org/10.1007/s00787-023-02138-3
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DOI: https://doi.org/10.1007/s00787-023-02138-3