Abstract
Circular RNA ITCH (circ-ITCH) is implicated in papillary thyroid carcinoma (PTC) development. Nevertheless, the more detailed molecular mechanism remains uncovered. The transcriptional level of circ-ITCH was tested via quantitative real-time PCR. Transwell assay was introduced to assess the migrative and invasive abilities of cells. RNA interference technology was employed to reduce the level of circ-ITCH as well as JAZF1 in PTC cells. Western blot assay was utilized to reveal the content of JAZF1 and proteins related to epithelial–mesenchymal transformation (EMT) progression. Circ-ITCH was downregulated in PTC tissues as well as cells. Overexpression of circ-ITCH suppressed EMT, migration, invasion, facilitated apoptosis in PTC cells, while silencing circ-ITCH exhibited reversed effects. Additionally, miR-106a-5p was the target of circ-ITCH and negatively regulated through circ-ITCH. MiR-106a-5p mimic partly eliminated the influences of overexpressed circ-ITCH in PTC cells. Moreover, JAZF1 could interact with miR-106a-5p, then it was regulated via circ-ITCH. Silencing JAZF1 partially counteracted the role of circ-ITCH in PTC cells progress. This study uncovered that circ-ITCH suppressed the development of PTC cells at least partly by mediating miR-106a-5p/JAZF1 network.
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Introduction
Thyroid cancer is the most frequent malignancy of the endocrine system, and its incidence has been on the rise in recent years, increasing by more than 5% per year (Regenstein et al. 2016; Lim et al. 2017; Chen et al. 2009; Garg et al. 2014, 2017). Papillary thyroid carcinoma (PTC) is identified as the most frequent thyroid cancer (Schneider and Chen 2013). Currently, some traditional treatment alternatives such as surgery as well as radiation therapy have effectively improved the survival rate of PTC patients (Frohlich and Wahl 2014). Most sufferers with PTC will be successfully treated by these series of means, while a portion of PTC patients still develop complications and eventually die after treatment.
Circular RNAs (circRNAs), a recently discovered class of noncoding RNAs, are discovered to exhibit vital roles in diverse biological activities including carcinogenesis (Memczak et al. 2013; Zhou et al. 2018). For example, circRNA WHSC1 facilitates endometrial cancer progression by regulating miR-646/NPM1 axis (Liu et al. 2020). CircRNA ITCH (circ-ITCH) was firstly introduced by Memczak’s team. It is found that circ-ITCH serves as a suppressor in cancers (Yang et al. 2018; Ren et al. 2019; Zhao et al. 2021). Additionally, Emerging evidence proved circ-ITCH blocked PTC progress via miR-22-3p/CBL/β-catenin axis (Wang et al. 2018). However, more investigations should be conducted to enrich the molecular network of circ-ITCH in PTC progression and to more strongly verify whether circ-ITCH is able to be regarded as the therapeutic target of PTC.
MicroRNAs (miRNAs) as another vital endogenous non-coding RNAs consist of 19–24 nucleotides and play roles by degrading mRNAs or suppressing their transcription (Cheng et al. 2015; Martello et al. 2010; Kloosterman and Plasterk 2006). Increasing evidence illustrated that miRNAs are involved in multiple malignancies (Ma et al. 2020; Zheng et al. 2019; Wang et al. 2021). The starBase database proved that miR‐106a‐5p has potential sites that bind to circ-ITCH. Moreover, it is reported that miR-106-5p is associated with a variety of cancers including lung adenocarcinoma (Liu et al. 2021) and oral squamous cell carcinoma (Zhu et al. 2020). Nevertheless, it is unclear whether circ-ITCH exerts its roles in PTC cells via miR-106a-5p.
JAZF1 was first reported as a protein capable of interacting with TAK1 in 2004 (Nakajima et al. 2004). It is discovered to regulate diverse cellular functions like cell differentiation and inflammatory response (Johnson et al. 2018; Meng et al. 2018). Previous studies illustrated that JAZF1 regulates the development of diverse tumors, such as gastric cancer (Lim et al. 2017) and prostate cancer (Chen et al. 2009).
Besides, Huang et.al verified that JAZF1 inhibits growth and accelerates apoptosis of PTC cells (Huang et al. 2019). However, the upstream genes mediating JAZF1 in PTC cells remain uncovered. Interestingly, accumulating evidence proved that JAZF1 exerts a non-negligible role in cellular activities as the downstream target of diverse miRNAs (Lim et al. 2017; Garg et al. 2014). Previous results in the present study demonstrated that miR-106a-5p could inhibit the expression of its target gene, JAZF1 in PTC cells, which also aroused our great research interest.
This study revealed circ-ITCH weakened EMT progression and accelerated apoptosis in PTC cells through miR-106a-5p-mediated JAZF1 expression.
Materials and Methods
Samples
PTC tissues as well as para cancer tissues were collected from 8 patients with PTC in the Affiliated Hospital of Putian University, which was approved by the Ethics Committee of Affiliated Hospital of Putian University (Approval No. 2023082). Every patient in the study signed an informed consent form.
Cell Culture
TPC-1, BCPAP, as well as Nthy-ori 3-1 cell lines were brought from Tongpai (Shanghai) Biotechnology Co., Ltd (China). IHH-4 cell line was brought from Shanghai Tongwei Industrial Co., Ltd (China). The cells were maintained in RPMI-1640 medium (R8758, Sigma-Aldrich, USA) in a 37 °C incubator with 5% CO2.
QRT-PCR
Total RNA was collected from PTC tissues, para cancer tissues, or cells using TRIzol (T9424, Sigma-Aldrich, USA). Besides, the NE-PER Nuclear and Cytoplasmic Extraction Reagents (78833, Thermo Scientific, USA) were introduced to isolate the fractions in nuclear and cytoplasm of PTC cells. A Titan One Tube RT-PCR kit (11855476001, Roche, Switzerland) was employed to produce complementary DNA (cDNA) abiding by the manufacturer’s guidelines. The transcription levels of specific genes were detected by qPCR utilizing FastStart Universal SYBR Green premix (FSUSGMMRO, Roche, Switzerland) as described in the kit’s protocol. The qPCR was conducted as described in previous study (Peng et al. 2017). In simple terms, the reaction system is prepared as exhibited in Table 1 and the qPCR was performed on the ABI 7300 Real-Time PCR System (Applied Biosystems, USA) according to the procedure presented in Table 2. 2−ΔΔCt method was introduced to estimate the level of target gene. GAPDH and U6 was regarded as the internal control for mRNAs, circRNA, and miRNAs. The sequence of all primers is exhibited in Table 3.
Transwell Assay
The migration or invasion of PTC cells were detected using Matrigel-free or Matrigel (354262, Corning, USA)-covered Corning HTS Transwell chambers (CLS3396, Corning, USA), as described in previous studies (Tang et al. 2021; Shang et al. 2020). Briefly, transfected PTC cells were collected in FBS-free RPMI-1640 medium and implanted in the upper chamber. The RPMI-1640 medium containing FBS was added to the lower chamber and then the cells were cultured at 37 °C for 24 h. Next, the PTC cells in upper chamber were removed. The cells in lower chamber were fixed with 4% polyformaldehyde fixing solution (60536ES60, Yesen, China) and stained with 0.1% crystal violet (60505ES25, Yesen, China). The migrated or invasive cells were recorded utilizing a microscope.
Western Blotting
Tissues as well as cells were lysed using RIPA Lysis Buffer Suit (BI-WB015, SenBeiJia China). Then SDS-PAGE was introduced to isolate total protein and proteins were shifted to polyvinylidene fluoride membrane (MS-5020, Membrane Solutions, USA). Next, the membranes were incubated utilizing primary antibodies as shown in Table 4 and then treated with secondary antibodies. Finally, the protein was visualized with a kit (34095, Thermo Scientific, USA).
Cell Apoptosis
An Annexin V-FITC-PI kit (APOAF, Sigma-Aldrich, USA) was employed to detect cell apoptotic rate according to the kit’s protocol. Briefly, transfected PTC cells (1 × 105 cells/well) were harvested in binding solution containing 5 μl Annexin V-FITC as well as 5 μl Prodium Iodide. Then the mixture was incubated in the dark at 37 °C for 15 min. Finally, the apoptotic rate was recorded using a flow cytometer.
Cell Transfection
MiR-106a-5p mimic (5′-AAAAGUGCUUACAGUGCAGGUAG-3′), miR-106a-5p inhibitor (5′-CUACCUGCACUGUAAGCACUUUU-3′), and miR-NC (5′-UUCUCCGAACGUGUCACGUTT-3′) were purchased from Genomeditech (China) and transfected into cells employing a reagent (L3000015, Invitrogen, USA) abiding by the manufacturer’s protocol. After 36–72 h of transfection, subsequent analysis was conducted.
For circ-ITCH, vectors with siRNAs targeted circ-ITCH (si-circ-ITCH-1#-5′-GUCCUUCAUAAUGAGCUUCAG-3′; si-circ-ITCH-2#-5′-ACCUGGAUGGGUUGAAGAATT-3′; si-circ-ITCH-3#-5′-AUGGGUUGAAGAAGUAGUUTT-3′) or JAZF1 (5′-UCUGUGACCAUUCUUAGCGUG-3′) and control vector (5′-UUCUCCGAACGUGUCACGUTT-3′) were obtained from GenePharma (China), and transfected into cells employing a reagent (L3000015, Invitrogen, USA) as described above.
Luciferase Activity
PTC cells were co-transfected using vectors carrying with 3′UTR of circ-ITCH (wild type or mutant sequence) or JAZF1 (wild type or mutant sequence) and miR-106a-5p mimic, miR-106a-5p inhibitor or miR-NC. After 36–72 h, the supernatant was removed, and the activities of firefly and Renilla luciferase were measured with a Dual Luciferase Reporter Gene Assay Kit (RG027, Beyotime, China) according to the manufacturer’s protocol. The values were detected by employing a SpectraMax iD5- Multifunctional microplate reader (Molecular Device, China).
Statistical Analysis
All data analyses used p < 0.05 to represent the level of significance. All analyses were conducted using GraphPad Prism 9.2 (USA). The paired t test as well as one-way ANOVA were introduced as appropriate.
Results
Circ-ITCH is Downregulated in Human PTC Tissues and PTC Cells than Normal Thyroid Cells
PTC tissues and para cancer tissues (n = 8) were collected to estimate the expression level of circ-ITCH. The results demonstrated circ-ITCH was decreased in PTC tissues significantly (Fig. 1A). Moreover, circ-ITCH was reduced in PTC cells compared to normal human thyroid cells (Fig. 1B).
Circ-ITCH Overexpression Inhibits PTC Cells Progression
Circ-ITCH was overexpressed in TPC-1 as well as IHH-4 cell lines by transfecting with circ-ITCH overexpressed plasmid (Fig. 2A). Besides, further assay proved that the linear ITCH mRNA did not change significantly (Fig. 2B), indicating that only circ-ITCH was indeed overexpressed. The qRT-PCR analysis illustrated that overexpressed circ-ITCH was mainly localized in cytoplasm rather than nucleus of TPC-1 as well as IHH-4 cells transfected with circ-ITCH plasmid (Fig. 2C). The subsequent experiments revealed that circ-ITCH overexpression upregulated the protein level of E-cadherin while reduced that of N-cadherin, Vimentin, as well as Snail, indicating that circ-ITCH blocked EMT progression of PTC cells (Fig. 2D). Moreover, increased circ-ITCH inhibited invasion in addition to migration of PTC cells remarkably (Fig. 2E, F). Furthermore, flow cytometry assay confirmed that overexpression of circ-ITCH facilitated apoptosis in TPC-1 as well as IHH-4 cells (Fig. 2G). Collectively, overexpressed circ-ITCH inhibited EMT, invasion, as well as migration, and accelerated apoptosis in PTC cells.
Circ-ITCH Knockdown Promotes PTC Cells Progression
Next, RNA interference technology (si-RNA) was introduced to decreased the circ-ITCH expression in TPC-1 as well as IHH-4 cell lines, which is verified in Fig. 3A and si-circ-ITCH-2# exhibited the best efficiency (Fig. 3A). A series of functional experiments showed that silencing circ-ITCH-induced EMT facilitated migration in addition to invasion in PTC cells (Fig. 3B–D).
MiR-106a-5p is the Direct Target of circ-ITCH
To uncover more detailed molecular mechanisms by which circ-ITCH exerts its role in PTC cells, we screened the Starbase database and discovered miR-106a-5p possessed the binding sites with circ-ITCH (Fig. 4A). Transfection of miR-106a-5p mimic in TPC-1 cells notably upregulated miR-106a-5p level (Fig. 4B). Besides, miR-106a-5p suppressed the luciferase production of circ-ITCH-WT (wild type) (Fig. 4C), while there is little effect on that of circ-ITCH-MUT (mutant) (Fig. 4C). In addition, miR-106a-5p mimic reduced circ-ITCH expression, whereas miR-106a-5p inhibitor increased it obviously (Fig. 4D). Moreover, as shown in Fig. 4E, circ-ITCH overexpression dramatically inhibited miR-106a-5p expression but circ-ITCH knockdown exerted opposite effects (Fig. 4E). Furthermore, miR-106a-5p was highly expressed in PTC tissues (Fig. 4F). The findings indicated that miR-106a-5p was negatively mediated via circ-ITCH.
The Effect of circ-ITCH on PTC Cells Relies on miR-106a-5p
Subsequently, TPC-1 cells were co-transfected with pcDNA3.1-circ-ITCH or blank plasmid and miR-NC or miR-106a-5p mimic. Western blot assay illustrated that inhibitory EMT progression caused via circ-ITCH overexpression was eliminated through miR-106a-5p mimic (Fig. 5A). In addition, transwell assay also proved that the weakened effects of circ-ITCH overexpression on migration and invasion were partly counteracted by transfecting miR-106a-5p mimic (Fig. 5B, C). Furthermore, the increased apoptotic rate induced by pcDNA3.1-circ-ITCH was effectively reduced by miR-106a-5p overexpression (Fig. 5D). Collectively, these findings confirmed that circ-ITCH played its roles in PTC cells at least partly by mediating miR-106a-5p.
Circ-ITCH Positively Regulates JAZF1
StarBase database predicted that numerous genes could be targeted through miR-106a-5p, among which JAZF1 caught our attention (Fig. 6A). It has reported that JAZF1 is closely associated with the development of PTC cells (Peng et al. 2017). Besides, luciferase activity and qRT-PCR assays proved miR-106a-5p mimic notably weakened the transcriptional activity of JAZF1 (Fig. 6B, C). Meanwhile, miR-106a-5p mimic reduced JAZF1 expression, indicating that JAZF1 was negatively regulated via miR-106a-5p (Fig. 6D). Given the relationship of miR-106a-5p and JAZF1, we hypothesized that circ-ITCH and JAZF1 competitively bind with miR-106a-5p in PTC cells. As expected, co-transfecting pcDNA3.1-circ-ITCH as well as miR-106a-5p mimic effectively recovered the expression level of JAZF1. Moreover, circ-ITCH overexpression alone increased JAZF1 expression obviously (Fig. 6E). These findings revealed that JAZF1 might be involved in the regulatory network of circ-ITCH/miR-106a-5p in PTC cells.
Circ-ITCH Overexpression Suppresses PTC Cells Progression by Modulating JAZF1
To investigate the role of JAZF1 in PTC cells progression influenced by circ-ITCH, JAZF1 was downregulated by RNA interference technology. As exhibited in Fig. 7A, JAZF1 expression was reduced by si-JAZF1-1#, si-JAZF1-2#, and si-JAZF1-3#, especially by si-JAZF1-1# (p < 0.05, Fig. 7A). We chose TPC-1-si-JAZF1-1# cell line for next explorations. Overexpression of circ-ITCH inhibited EMT, migration, as well as invasion, which was reversed via silencing JAZF1 (p < 0.05, Fig. 7B–D). Moreover, JAZF1 inhibition partly decreased apoptotic cells induced by circ-ITCH overexpression (Fig. 7E). These data proved that circ-ITCH suppressed progression and promotes apoptosis of PTC cells at least partly by modulating JAZF1, the target gene of miR-106a-5p.
Discussion
CircRNAs are reported to participate in various biological progresses including tumor progression, and circRNAs might be serve as vital targets for treating diverse cancers (Zhang et al. 2018). Recent studies revealed that circRNAs are tightly related to the development of PTC. For instance, Circ-BACH2 exerts the essential effects on PTC via miR-139-5p/LMO4 network (Cai et al. 2019). Circ-FOXM1 modulating PTC development through miR-1179/HMGB1 pathway (Ye et al. 2020). Besides, circ-ITCH is reported to inhibit cell growth as well as invasion and facilitates apoptosis in PTC cells (Wang et al. 2018). Nevertheless, more mechanisms of circ-ITCH in PTC development need to be further investigated. Consistently, our present study confirmed circ-ITCH was under-expressed in PTC tissues in addition to cells. Additionally, circ-ITCH overexpression reduced PTC cells viability, migrated and invasive ability, and accelerated apoptosis, whereas circ-ITCH knockdown played opposite roles. Recent reporters have discovered that EMT is the main driving force for PTC metastasis (Shakib et al. 2019). EMT leads tumor cells to lose polarity as well as adhesion, thereby occurring invasion and metastasis (Gugnoni et al. 2017). To the best of our knowledge, this investigation revealed for the first time that circ-ITCH overexpression inhibited EMT process in PTC cells, while silencing circ-ITCH promoted it remarkably.
It is reported that circRNAs was able to exert its roles in PTC by interacting with miRNAs as the competitive endogenous RNA (ceRNA) (Chan and Tay 2018). For instance, Wang et al. demonstrated circ-ITCH could affect PTC progression through miR-22-3p/CBL/β-catenin signal (Wang et al. 2018). However, both miR-22-3p mimics and silencing CBL only partially recovered the effects of ITCH overexpression, suggesting that molecular network of circ-ITCH in the development of PTC is complicated and it might inhibit PTC progression by mediating other miRNAs as well as their target genes. In this investigation, StarBase database in addition to dual luciferase detection confirmed that miR-106a-5p was the target of circ-ITCH. MiR-106-5p is implicated in diverse tumorigenesis. For example, miR-106a5p/STAT3 axis is associated with the development and ferroptosis in breast cancer (Zhang et al. 2021). Besides, miR-106a-5p/PAK5 pathway reduced the migrated ability and invasive ability of renal cell carcinoma (Pan et al. 2017). Our present study firstly verified that circ-ITCH decreased the miR-106a-5p level in PTC cells. Moreover, the rescue assays demonstrated miR-106a-5p partially eliminated suppressive effects of circ-ITCH overexpression on EMT, thereby recovering migration as well as invasion of PTC cells. Thus, these findings suggested circ-ITCH exerted its roles in PTC cell at least partly via miR-106a-5p.
Increasing evidence reported that miRNAs could reduce the expression of target genes by degrading target mRNA or inhibiting its transcription (Garg et al. 2014). Here, we proved JAZF1 was the target of miR-106a-5p according to StarBase database and luciferase activity detection. JAZF1, a newly identified repressor of transforming growth factor beta-activated kinase1 (TAK1), has been found to exert crucial roles in diabetes as well as lipid metabolism (Wei et al. 2018). Huang et al. discovered that JAZF1 is a tumor suppressor in PTC, while its upstream regulatory genes have not been defined. This work revealed miR-106a-5p inhibited JAZF1 expression in PTC cells, and the suppressive effect was effectively recovered by circ-ITCH overexpression. Moreover, silencing JAZF1 partly reversed EMT, migration, invasion, as well as the apoptosis of PTC cells affected by circ-ITCH overexpression, which indicated that circ-ITCH played its roles in PTC cells by mediating miR-106a-5p/JAZF1 axis.
There exist some limitations in the work. For instance, more samples are needed to verify whether circ-ITCH affects the prognosis of patients with PTC. Furthermore, the clinical functions of circ-ITCH will be investigated by employing a series of experiments.
Conclusion
This investigation firstly confirmed that circ-ITCH inhibited EMT, migration, as well as invasion and promoted apoptosis in PTC cells at least partly by modulating miR-106a-5p/JAZF1 axis. These findings provide a novel insight for treating PTC.
Data Availability
The data used to support these findings of this study are included in this study.
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Funding
This work was supported by Fujian Province Natural Science Foundation project (2021J011375 and 2023J011720).
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YC and ZL contributed to the conception of the study. GZ and YL contributed significantly to the data analysis and study preparation. GZ and WL performed the data analyses and wrote the study. JG and ZZ helped perform the analysis with constructive discussions. All authors have read and approved the final study.
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This investigation was admitted by the Ethics Committee of the Affiliated Hospital of Putian University. All experimental procedures abide by the Declaration of Helsinki.
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Chen, Y., Lian, Z., Zhang, G. et al. CircRNA ITCH Inhibits Epithelial–Mesenchymal Transformation and Promotes Apoptosis in Papillary Thyroid Carcinoma via miR-106a-5p/JAZF1 Axis. Biochem Genet (2024). https://doi.org/10.1007/s10528-024-10672-1
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DOI: https://doi.org/10.1007/s10528-024-10672-1