Abstract
Cancer cells rely on glycolysis to maintain high levels of anabolism. However, the metabolism of glucose via glycolysis in cancer cells is frequently incomplete and results in the accumulation of acidic metabolites such as pyruvate and lactate. Thus, the cells have to develop strategies to alleviate the intracellular acidification and maintain the pH stability. We report here that glutamine consumption by cancer cells has an important role in releasing the acidification pressure associated with cancer cell growth. We found that the ammonia produced during glutaminolysis, a dominant glutamine metabolism pathway, is critical to resist the cytoplasmic acidification brought by the incomplete glycolysis. In addition, C-terminal-binding protein (CtBP) was found to have an essential role in promoting glutaminolysis by directly repressing the expression of SIRT4, a repressor of glutaminolysis by enzymatically modifying glutamate dehydrogenase in mitochondria, in cancer cells. The loss of CtBP in cancer cells resulted in the increased apoptosis due to intracellular acidification and the ablation of cancer cell metabolic homeostasis represented by decreased glutamine consumption, oxidative phosphorylation and ATP synthesis. Importantly, the immunohistochemistry staining showed that there was excessive expression of CtBP in tumor samples from breast cancer patients compared with surrounding non-tumor tissues, whereas SIRT4 expression in tumor tissues was abolished compared with the non-tumor tissues, suggesting CtBP-repressed SIRT4 expression contributes to the tumor growth. Therefore, our data suggest that the synergistically metabolism of glucose and glutamine in cancer cells contributes to both pH homeostasis and cell growth. At last, application of CtBP inhibitor induced the acidification and apoptosis of breast cancer cells and inhibited glutaminolysis in engrafted tumors, suggesting that CtBP can be potential therapeutic target of cancer treatment.
Similar content being viewed by others
Main
Cancer cells require carbon source that mainly exists in circulating plasma, such as glucose and glutamine, for ATP production and biosynthesis.1 Glucose metabolism in cancer cells is mainly through the glycolysis pathway, and several intermediates during glycolysis are used as substrates for subsequent branching biosynthetic pathways such as the pentose phosphorylation pathway and glycine–serine synthesis pathways and so on.2 The consequence of cancer cell-specific glycolysis is the accelerated glucose consumption and continuing supply of building blocks of amino acids, fatty acids and nucleotides.3, 4, 5
Glutamine is the most abundant amino acid in the plasma and was thought to be the nitrogen carrier as its most important role.6, 7 The growth of some cancer cells display as glutamine-dependent, but the required glutamine exceeds the obligated nitrogen supply, suggesting that glutamine has other functions in supporting cancer cell growth.1 For instance, cancer cells are able to sustain the tricarboxylic acid (TCA) cycle by providing the intermediates through a process called anaplerotic metabolism pathway.8 Through the deamination reaction, glutamine can be converted to glutamate and α-ketoglutarate (αKG), and subsequently enter into the TCA cycle. This pathway is also known as glutaminolysis and there are two enzymes catalyzing this process consecutively. The first enzyme is glutaminase (GLS), converting glutamine to glutamate, and the second enzyme is glutamate dehydrogenase (GDH), converting glutamate to αKG.6 Each enzymatic reaction releases one molecule of ammonia into mitochondria, which can diffuse to the cytoplasm and extracellular space and contribute to cell survival.9 GLS activity was already shown to correlate with tumor cell growth.7 Inhibition of GLS activity prevents oncogenic transformation and retards cell growth.10, 11 Recent studies also suggested that GDH is essential to support cancer cell growth by supplying the essential TCA intermediate αKG.12, 13
The C-terminal-binding proteins (CtBP1/2) are a dimeric family of proteins encoded by two analogous genes, CtBP1 and CtBP2, which have extensive roles in animal cell development.14 By forming either heterodimers or homodimers in the presence of nicotinamide adenine dinucleotide, CtBP is able to interact with gene-specific transcriptional factors and recruit several known epigenetic modifying enzymes such as LSD1, HDACs, G9a and so on to the target genes.15, 16 CtBP was found to directly repress the expression of several important tumor suppressor genes, and is involved in the epithelial to mesenchymal transition (EMT) during the cancer cell metastasis and other processes.17, 18 Extensive profiles of CtBP-target genes are identified recently in breast cancer cells, supporting that CtBP is an independent factor for tumor initiation, progression and metastasis by transcriptionally regulating genes related to stem cell pathways, genome stability, EMT and cancer cell metabolism.19
In the present study, we report a novel CtBP function in promoting glutaminolysis and maintaining the pH homeostasis, which are indispensable for the survival of breast cancer cells. We also show that SIRT4 is a target of CtBP and has negative correlation to CtBP in tumors. Further studies discovered that targeting CtBP results in the increased tumor cell apoptosis owing to the breakdown of pH homeostasis in engrafted tumors, suggesting that CtBP can be a potential therapeutic target for breast cancer treatment.
Results
CtBP is essential in supporting cell growth and maintaining the pH homeostasis during tumor cell growth
To investigate the effect of CtBP on tumor cell growth, we performed CtBP knockdown in human mammary epithelial cancer cell lines MCF-7 cells and MDA-MB-231 cells. CtBP knockdown resulted in the significant retardation of cell proliferation indicated by BrdU incorporation assay in both cells (Figures 1a and b), and led to decreased Cyclin D1 and upregulated p21waf1/cip1 (Supplementary Figure 1), which indicate the decreased cell proliferation.20, 21 These data suggest that CtBP is essential to promote cancer cell growth.
Normally, growth retardation of cells is expected to delay the acidification of the medium because of the decreased glucose consumption and lactate production and secretion.22 Unexpectedly, the culture medium of CtBP knockdown cells exhibited an accelerated acidification in both MCF-7 cells and MDA-MB-231 cells compared with the control cells as indicated by the phenol-red indicator (Figures 1c and d). The medium pH dropped and cytoplasmic acidity increased significantly in both MCF-7 cells and MDA-MB-231 cells when CtBP was knocked down (Figures 1c–f). These results indicate that CtBP is essential to maintain the pH homeostasis of growing cancer cells. For actively proliferating cancer cells, release of lactate is increased because of the excessively increased anaerobic glycolysis, leading to decreased pH value that was also termed as 'Warburg effect'. However, CtBP knockdown decreases cell growth as well as the lactate production (Figures 1g and h), suggesting that lactate production is not the reason of the acidification of the culture medium.
CtBP promotes cell growth and represses apoptosis of cancer cells via regulating glutaminolysis
In addition to the glycolysis, recent studies suggested that incorporation of glutaminolysis into the TCA cycle might also contribute to the cancer cell growth.23, 24, 25, 26 In fact, when glutamine was withdrawn from the culture medium, the MCF-7 cells and the MDA-MB-231 cells showed significant decrease of proliferation (Figure 2a and Supplementary Figure 2A). Interestingly, the culture medium, as well as the cytoplasm, also exhibited accelerated acidification compared with the control cells when glutamine was withdrawn (Figures 2b and c, Supplementary Figures 2B and 2C). Bis-2-(5-phenylacetamido-1,3,4-thiadiazol-2-yl)ethyl sulfide (BPTES) is known to inhibit the glutaminolysis by inhibiting GLS and reducing the flux of glutamine to TCA cycle.27 Application of BPTES resulted in significant increasing of intracellular acidity (Figure 2d and Supplementary Figure 2D). A recent study suggested that glutamine may contribute to pH regulation by releasing ammonia.28 In fact, glutamine withdrawal directly affected the ammonia, releasing into the medium significantly (Figure 2e). BPTES treatment of MCF-7 and MDA-MB-231 cells resulted in reduction of ammonia (Figure 2f and Supplementary Figure 2E), suggesting that glutaminolysis-dependent ammonia production is critical to pH stability in cancer cells. Surprisingly, there was a significant decrease of ammonia level in the culture medium of both MCF-7 cells and MDA-MB-231 cells with CtBP knockdown (Figure 2g and Supplementary Figure 2F), suggesting that CtBP status influences intracellular pH via regulating ammonia production.
To confirm that CtBP regulates ammonia production by affecting glutaminolysis pathway, the glutamine consumption was measured in MCF-7 cells and MDA-MB-231 cells with CtBP knockdown or CtBP overexpression. CtBP knockdown significantly decreased the glutamine consumption, whereas CtBP overexpression increased the glutamine consumption (Figure 2h and Supplementary Figure 2G). Consequently, CtBP knockdown induced significant acidification of MCF-7 cells (Figures 2i and j), which is independent of reactive oxygen species (ROS) (Supplementary Figure 2H). CtBP knockdown also induced apoptosis judged by terminal deoxynucleotidyltransferase-mediated dUTP nick end labeling (TUNEL) assay (Figure 2k). Extra NaHCO3 supplementation recovered the pH, and importantly, rescued the cancer cell induced by CtBP knockdown (Figures 2i–k, Supplementary Figures 2I and 2J). These data strongly imply that CtBP positively facilitates glutaminolysis to release more ammonia and contributes to the maintenance of the metabolic homeostasis of cancer cells, which is crucial to protect the cells against acidification induced apoptosis.
CtBP negatively regulates SIRT4 to affect glutaminolysis
SIRT4 is a known repressor of GDH and is located in the mitochondria.23, 25, 26, 29 Several recent studies demonstrated that SIRT4 is required to inhibit glutamine-dependent metabolism in response to DNA-damage stress and prohibit the tumor growth in different tissues.23, 25, 26, 29 Interestingly, in previous gene expression microarray data, SIRT4 mRNA showed significant upregulation upon CtBP knockdown in MCF-7 cells.19 In addition, a significant binding peak was identified at SIRT4 gene promoter in CtBP genome-wide-binding profile analysis (Supplementary Figure 3A). Consistently, CtBP was also found to have a significant binding peak at SIRT4 promoter in Encyclopedia of DNA Elements project (Supplementary Figure 3B).30 To validate these previous data, the SIRT4 expression was examined in MCF-7 cells and MDA-MB-231 cells. Knockdown of CtBP increased SIRT4 expression at both mRNA and protein level in MCF-7 cells and MDA-MB-231 cells, whereas CtBP overexpression downregulated SIRT4 expression significantly (Figures 3a and b,Supplementary Figures 3C and 3D). Next, we determined the expression pattern of SIRT4 and CtBP in human breast tumor samples. The immunohistochemistry staining showed that there was significant excessive expression of CtBP in tumor samples compared with surrounding non-tumor tissues, whereas SIRT4 expression in tumor tissues was abolished compared with the non-tumor tissues (Figure 3c). Such an inverse expression pattern of these two proteins can be confirmed by Pearson correlation analysis (R=−0.5908) and further reflects that CtBP negatively regulates SIRT4 expression in human breast tumor tissues (Supplementary Figure 3E). Furthermore, the excessive expression of CtBP in breast tumor samples highly suggests that CtBP is positively associated with breast tumor development. Then, chromatin immunoprecipitation (ChIP) assay demonstrated the binding of CtBP at SIRT4 gene promoter (Figure 3d and Supplementary Figure 3F), suggesting a direct regulation of SIRT4 by CtBP. In addition, SIRT4 knockdown, when combined with CtBP knockdown, was able to reverse the decreased glutamine consumption observed in CtBP knockdown cells (Figure 3e and Supplementary Figure 3G). As expected, both CtBP status and SIRT4 status no longer affect the reduced glutamine consumption rate upon BPTES treatment (Figure 3e and Supplementary Figure 3G), consistent to the inhibitory specificity of BPTES on GLS that catalyzes the glutaminolysis reaction one step earlier than GDH. To further confirm that CtBP affects glutamine consumption by influencing GDH activity, the enzymatic activity of GDH were measured. The data show that CtBP positively regulates GDH activity in a SIRT4-dependent manner because SIRT4 knockdown and CtBP knockdown combination reversed the decreased GDH activity observed in cells with CtBP knockdown alone (Figure 3f and Supplementary Figure 3H). Ammonia production is also regulated by CtBP in a SIRT4-dependent manner (Figure 3g and Supplementary Figure 3I). Consistently, the increased acidification upon CtBP knockdown was overcome when SIRT4 was knocked down together (Figures 3h and i, and Supplementary Figures 3J and 3K). Taken together, these findings highlight the role of CtBP in regulating glutaminolysis via repressing SIRT4 expression.
CtBP-promoted glutaminolysis is essential to maintain cellular respiration activity
Glutamine is essential for the growth of some cancer cells such as MCF-7 and MDA-MB-231 cells. Glutamine mainly serves as anaplerotic substance in supporting TCA cycle in cancer cells. In view of the critical role of CtBP in regulating glutaminolysis pathway and its positive influence on cancer cell growth via regulating SIRT4, we wonder if CtBP-regulated glutaminolysis pathway has global effect on cell metabolism. A significant decrease of ATP synthesis was observed when CtBP was knocked down in MCF-7 cells and MDA-MB-231 cells (Figures 4a and b). Similarly, decrease of ATP production can be seen in the cells treated by BPTES or cultured in glutamine-free medium (Figures 4a and b). Also, the oxygen consumption rate (OCR) decreased markedly in CtBP knockdown cells (Figure 4c). So we further measured the membrane potential ΔΨ of mitochondria,31 which directly correlates with the oxygen consumption and ATP production. BPTES treatment results in mitochondrial membrane potential decreased significantly as assessed by JC-1 staining of inter-membrane protons (Figure 4d), consistent to Weinberg et al.’s32 observation. CtBP knockdown resulted in the decreasing of mitochondrial membrane potential significantly, and SIRT4 knockdown increased the mitochondrial membrane potential slightly but significantly (Figure 4d). However, SIRT4 knockdown and CtBP knockdown together restored decreased mitochondrial membrane potential (Figure 4d), suggesting that the glutaminolysis is essential to maintain the proper function of mitochondria in cancer cells, which is regulated by CtBP and SIRT4.
The inhibition of CtBP repressive activity by MTOB interrupts metabolic homeostasis and glutaminolysis in cancer cells
MTOB (4-methylthio-2-oxobutanoate) is a proven inhibitor of CtBP function with observed effect in inhibiting the engrafted tumor growth.33 Importantly, MTOB was shown to directly inhibit the repressive function of CtBP.19, 33, 34 Thus, the MTOB function in affecting the intracellular metabolic homeostasis was investigated. Application of MTOB accelerated the acidification of both culture medium and cytoplasm in MCF-7 cells (Figures 5a and b), indicating MTOB is capable of destroying the pH homeostasis of cancer cells. MTOB also accelerated the intracellular acidification of MDA-MB-231 cells significantly (Supplementary Figure 4A). To confirm that MTOB effect on pH is via CtBP and SIRT4, we performed ChIP assay and found that MTOB effectively alleviated CtBP binding at SIRT4 promoter (Figure 5c and Supplementary Figure 4B). The expression of SIRT4 increased as expected after MTOB treatment (Figure 5d and Supplementary Figure 4C). Consistently, the cells showed robust decrease in glutamine consumption in response to MTOB treatment (Figure 5e and Supplementary Figure 4D). The GDH activity, as well as the ammonia production, were also significantly inhibited by MTOB (Figures 5f and g and Supplementary Figures 4E and 4F). In order to evaluate the potential of CtBP to be breast tumor therapeutic target, the cell viability was measured and we observed that MTOB was able to induce significant decrease of cell viability, which is consistent with Straza’s observation in HCT116 cells.33 However, adding extra NaHCO3 together with MTOB significantly rescued the cell viability (Figure 5h and Supplementary Figure 4G), suggesting that pH homeostasis disturbance significantly contributes to MTOB-induced cell apoptosis. Collectively, the data indicate that chemicals targeting CtBP may be developed and contribute to cancer cell death and potentially can be used as therapeutic drug.
MTOB induces cell apoptosis in engrafted tumors via regulating SIRT4 and GDH activity
Then, the effect of MTOB on engrafted tumors was tested. Around 1 × 104 MCF-7 cells were subcutaneously injected to immunodeficient nude mice to generate engrafted tumors. Then MTOB was applied to the tumors every 2 days for three times. The GDH activity of the tumor cells was measured. MTOB significantly decreased the GDH activity in engrafted tumors (Figure 6a). Accordingly, the ammonia level extracted from the MTOB-treated tumors was significantly lower than PBS-treated tumors (Figure 6b). The increased SIRT4 expression and the abolishment of CtBP binding at SIRT4 promoter in MTOB-treated tumors were also confirmed (Figures 6c and d, and Supplementary Figure 5), suggesting that MTOB inhibits CtBP activity to upregulate SIRT4 expression, which contributes to the repression of GDH activity and glutaminolysis activity in vivo. Bcl-2 is an antiapoptosis gene and its downregulation associates with increased apoptosis in MCF-7 cells. A direct consequence of MTOB-inhibited GDH activity decreased Bcl-2 level, which indicates the increased tumor cell apoptosis (Figure 6d). As long-term treatment of engrafted tumors by MTOB shrunk the tumors,33 these data suggest that the apoptosis induced by breakdown of the intracellular glutaminolysis pathway may be the reason of the MTOB-induced tumor shrinking. Together, these in vitro and in vivo data strongly suggest that targeting CtBP, and breaking the pH homeostasis of cancer cells, are feasible to treat breast cancer.
Discussion
pH homeostasis and cancer
Several mechanisms are responsible for maintaining the pH within certain range and failure to retain the pH stability results in the apoptosis of cells.35, 36, 37 Surprisingly, our findings indicate a previous unrecognized mechanism through which the intracellular pH of cancer cells is regulated in favor of the cell growth (Figure 7). This mechanism relies on the excessive glutaminolysis pathway, which continually produces ammonia within the mitochondrial matrix in cancer cells. Actually, ammonia released in renal tubule epithelial cells, produced from glutaminolysis, is critical to form ammonium ions that is further metabolized to urea and excreted. This process is well known to be critical to maintain the cytoplasmic pH physiologically.38 In tumors, it was known that glutamine is mainly utilized as important carbon and nitrogen source. Our data, however, suggest that CtBP-regulated glutamine consumption in cancer cells forms an intracellular pH maintenance system and is critical to provide ammonia to balance the excessive acidification associated with tumor cell proliferation. According to our data, this glutamine-dependent pH management system is independent of other known mechanisms such as the cell membrane-bound proton exporters. Our findings of cancer cell dependence on glutaminolysis add an extra, but more general, strategy in dealing with the acidosis challenge, facing by the tumor cells.
CtBP and cell metabolism
CtBP is much better known for its response to cell metabolism status than its impact on cell metabolism pathways.19, 39, 40, 41, 42, 43 Our finding that CtBP regulates glutamine metabolism in cancer cells, to our knowledge, is the first report demonstrating that the cancer cell proliferation promoting function of CtBP requires its involvement in the metabolic control. Because excessive expression of CtBP was observed in many different types of cancers, and associated with the more aggressive subtype of cancer patients with worse outcome, our identification of CtBP function in regulating cancer cell metabolic pathways and resultant intracellular pH homeostasis accounts for above observation and reveals insights into CtBP effect on the molecular mechanisms of cancer cell growth and points to the therapeutic potential of CtBP in cancer treatment. In addition, our findings may be meaningful to understand the important role of CtBP in the development of the related tissues as well. According to previous studies, CtBP is involved in repressing the differentiation and maintaining the proliferation of progenitor cells from multiple tissues.41, 44, 45 Thus, CtBP may be critical to maintain the proliferation of the progenitor cells in different tissues by regulating the cellular metabolic pathways. Particularly for those progenitor cells reside in hypoxic niches, glycolytic and anaerobic respiration is a preferred energetic pathway and CtBP could be the essential regulator to support their self-renewal and pH homeostasis.
Glutamine and mitochondrial activity
Glutamine is the most abundant amino acid in the plasma. After entering into the cells, glutamine can be converted to glutamate, which is a versatile metabolic intermediate that connects with a wide variety of distinct biological processes such as synthesis of the antioxidant glutathione, amino-acid catabolism through transamination, anaplerotic supplementation for TCA cycle and so on.6, 9, 11, 23, 24, 29 Our observations reported here actually suggested that glutamine is also capable of promoting the oxidative phosphorylation and increases the mitochondrial membrane potential probably by providing more four carbon substances once it enters TCA cycle, which contributes to cancer cell growth. For cancer cells, there are at least several benefits can be obtained through the increased glutaminolysis. First of all, glutamine is important carbon and nitrogen source and can be supportive for tumor growth;6, 7, 10, 12, 13, 25 second, the by-product of glutaminolysis, ammonia, is important to suppress the acidosis pressure associated with the glycolytic proliferation;9, 28, 38 third, glutamine is also beneficial to suppress the ROS crisis in cancer cells;32, 46, 47 and at last, glutaminolysis is also contributive to increase the mitochondrial activity and enhances the ATP production.29, 32 Thus, our findings of CtBP-promoted glutaminolysis is an indispensable pathway for tumor cell survival and growth. In addition, we also observed that a possible tumor repressor, SIRT4, was demonstrated to negatively mediate CtBP-regulated glutaminolysis. As SIRT4-repressed glutaminolysis inhibited cancer cell growth,25, 26 our elucidation that SIRT4 acts as a target gene of CtBP further strongly supports the view that CtBP can be a potential target of tumor therapeutic strategy.
Materials and Methods
Chemicals and reagents
BPTES, 4-methylthio-2-oxobutyric acid (MTOB), are purchased from Sigma-Aldrich (St. Louis, MO, USA). BPTES was dissolved in DMSO at 5 mM as stock. MTOB was dissolved in medium to 250 mM and diluted to 10 mM final concentration in cell culture. The antibody to CtBP used for ChIP was purchased from Santa Cruz Biotechnology (Dallas, TX, USA) and is cross-reactive with both CtBP1 and CtBP2. The lactate, glutamine, glucose and ammonia colorimetric assay kits are purchased from Biovision (San Francisco, CA, USA) and Bioassay system (Hayward, CA, USA).
Cell culture
MCF-7 cells and MDA-MB-231 cells were maintained in regular DMEM supplemented with 10% (v/v) FBS, penicillin-streptomycin (Invitrogen, now part of Thermo Fisher Scientific, Waltham, MA, USA) and insulin. For knockdown experiments, the procedure and oligo for CtBP knockdown is the same as described before.19 SIRT4 knockdown oligoes were purchased from Santa Cruz as mixed oligoes pool, and the procedure followed the manual provided by the manufacture. For overexpression experiments, CtBP expression vector was transfected into the indicated cells as described.19
Cell growth curve measurement
The cell growth was measured using BrdU incorporation kit from CellSignal (Danvers, MA, USA) and followed the manufacture’s procedure or MTT assay.
RT-PCR and western blotting
Both experiments are performed following the standard protocol (see Supplementary data).
ChIP
All ChIP experiments were carried out as described.19
pH measurement
For culture medium, the medium was removed from the culture dish immediately after the dishes leaving the incubator, and the pH was measured using regular lab oratory pH meter. For measurement of cytoplasmic pH, a fluorescence probe BCECF-AM was applied. The fluorescence signal of BCECF-AM is positively correlated with intracellular pH and negatively correlated with intracellular acidity. BCECF-AM stock (5 mM) was purchased from Beyotime (Nantong, Jiangsu, China) and 10 uM final concentration was applied to the cells. Incubate the cells with BCECF-AM for 30 min. Wash away the extra BCECF-AM solution from the cells by PBS for three times. Then the cells are kept in PBS and the signals are read using the fluorescent plate reader with the excitation at 480 nm and emission at 535 nm.
Measurements of glutamine, glucose, ammonia, lactate in the medium
The measurements of these metabolites were performed according to the manual provided by the manufacture of these colorimetric kits. In brief, the cell culture medium was harvested and centrifuged to remove the debris. The medium then was diluted for 2–10 times depending on the applications. The substrates and the enzymes were added to each sample and allow them to react for required time secured from light. Then the colorimetric signals were obtained by reading the plates at assigned wavelength. The detailed manuals are provided by the manufacture (Bioassay Systems). For ammonia measurement, the readings include both ammonia and ammonium.
Mitochondria inner membrane potential assay
Mitochondrial membrane potential was estimated by staining cells with 5,5′,6,6′-tetrachloro-1,1′,3,3′,-tetra-thylbenzimidazole carbocyanide iodide (JC-1) fluorescence dye (Invitrogen). The cells were treated accordingly. Then the cells were incubated with JC-1 (10 ug/ml) at 37°C for 30 min. Red fluorescence (excitation 550 nm, emission 600 nm) and green fluorescence (excitation 485 nm, emission 535 nm) was detected using a Microplate Reader. The ratio of red to green fluorescence was considered as a degree of mitochondria membrane potential.
OCR measurement
A Seahorse Bioscience XF24-3 Extracellular Flux Analyzer was used to measure the OCR. MCF-7 cells were seeded in XF 24-well microplates at 2.5 × 104 cells/well. Respiration was measured under different conditions. The procedure followed the standard manual from the manufacture and was described before.48
Immunohistochemistry staining of tissues
Formalin-fixed, paraffin-embedded human normal breast and tumor breast tissue arrays were purchased from Biomax (Rockville, MD, USA) with patients's information available. The procedure of tissue immunohistochemistry analysis for CtBP and SIRT4 was described elsewhere.19 In total, there are 50 breast tumors diagnosed as grade II or above and the corresponding normal breast tissues analyzed. The pictures were obtained at the same settings using optical microscopy with a high-resolution camera. The quantitation of antibody staining intensity is through Image J.
Engrafted tumors in nude mice and GDH activity measurement
The Animal Research Ethics Committee approved all animal procedures. Around 104 cancer cells were used to inject nude mice subcutaneously. When the tumors can be seen to reach ~5 mm diameter in size, the MTOB (750 mg/500 g body weight) was resolved in PBS and was also injected to the subcutaneous space close to the tumors. The MTOB injection was performed three times with 2-day intervals and the control mice were injected with the same volume of PBS at the same position. The tumors were isolated and 5 mg of fresh tumor tissues was used for GDH activity assay and ammonia/ammonium assay. The procedure in analyzing GDH activity followed the manual provided by the manufacture of GDH activity assay kit (Biovision). Protein was also extracted from tissue samples using standard procedure and was analyzed by western blotting.
TUNEL assay
TUNEL was performed according to the manual provided by the manufacture (Life Technology, now part of Thermo Fisher Scientific).
Statistical analysis
All the error bars represent the S.D. of the mean from at least three independent biological replicates unless otherwise indicated. Comparisons between two groups were done using unpaired Student’s t test. P<0.05 was considered statistically significant.
Abbreviations
- CtBP:
-
C-terminal-binding protein
- TCA cycle:
-
tricarboxylic acid cycle
- ChIP:
-
chromatin immunoprecipitation
- αKG:
-
α-ketoglutarate
- GLS:
-
glutaminase
- GDH:
-
glutamate dehydrogenase
- NADH:
-
nicotinamide adenine dinucleotide
- EMT:
-
epithelial to mesenchymal transition
- BPTES:
-
bis-2-(5-phenylacetamido-1,3,4-thiadiazol-2-yl)ethyl sulfide
- MTOB:
-
4-methylthio-2-oxobutyric acid
- JC-1:
-
5,5′,6,6′-tetrachloro-1,1′,3,3′,-tetra-thylbenzimidazole carbocyanide iodide
References
Cantor JR, Sabatini DM . Cancer cell metabolism: one hallmark, many faces. Cancer Discov 2012; 2: 881–898.
Locasale JW, Cantley LC . Metabolic flux and the regulation of mammalian cell growth. Cell Metab 2011; 14: 443–451.
Lunt SY, Vander Heiden MG . Aerobic glycolysis: meeting the metabolic requirements of cell proliferation. Annu Rev Cell Dev Biol 2011; 27: 441–464.
Levine AJ, Puzio-Kuter AM . The control of the metabolic switch in cancers by oncogenes and tumor suppressor genes. Science 2010; 330: 1340–1344.
Vander Heiden MG, Cantley LC, Thompson CB . Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science 2009; 324: 1029–1033.
DeBerardinis RJ, Mancuso A, Daikhin E, Nissim I, Yudkoff M, Wehrli S et al. Beyond aerobic glycolysis: transformed cells can engage in glutamine metabolism that exceeds the requirement for protein and nucleotide synthesis. Proc Natl Acad Sci USA 2007; 104: 19345–19350.
Kung HN, Marks JR, Chi JT . Glutamine synthetase is a genetic determinant of cell type-specific glutamine independence in breast epithelia. PLoS Genet 2011; 7: e1002229.
DeBerardinis RJ, Lum JJ, Hatzivassiliou G, Thompson CB . The biology of cancer: metabolic reprogramming fuels cell growth and proliferation. Cell Metab 2008; 7: 11–20.
Eng CH, Yu K, Lucas J, White E, Abraham RT . Ammonia derived from glutaminolysis is a diffusible regulator of autophagy. Sci Signal 2010; 3: ra31.
Seltzer MJ, Bennett BD, Joshi AD, Gao P, Thomas AG, Ferraris DV et al. Inhibition of glutaminase preferentially slows growth of glioma cells with mutant IDH1. Cancer Res 2010; 70: 8981–8987.
Wang JB, Erickson JW, Fuji R, Ramachandran S, Gao P, Dinavahi R et al. Targeting mitochondrial glutaminase activity inhibits oncogenic transformation. Cancer Cell 2010; 18: 207–219.
Wise DR, Thompson CB . Glutamine addiction: a new therapeutic target in cancer. Trends Biochem Sci 2010; 35: 427–433.
Shanware NP, Mullen AR, DeBerardinis RJ, Abraham RT . Glutamine: pleiotropic roles in tumor growth and stress resistance. J Mol Med 2011; 89: 229–236.
Hildebrand JD, Soriano P . Overlapping and unique roles for C-terminal binding protein 1 (CtBP1) and CtBP2 during mouse development. Mol Cell Biol 2002; 22: 5296–5307.
Shi Y, Sawada J, Sui G, Affar el B, Whetstine JR, Lan F et al. Coordinated histone modifications mediated by a CtBP co-repressor complex. Nature 2003; 422: 735–738.
Zhao LJ, Subramanian T, Vijayalingam S, Chinnadurai G . PLDLS-dependent interaction of E1A with CtBP: regulation of CtBP nuclear localization and transcriptional functions. Oncogene 2007; 26: 7544–7551.
Byun JS, Gardner K . C-terminal binding protein: a molecular link between metabolic imbalance and epigenetic regulation in breast cancer. Int J Cell Biol 2013; 2013: 647975.
Byun JS, Gardner K . Wounds that will not heal: pervasive cellular reprogramming in cancer. Am J Pathol 2013; 182: 1055–1064.
Di LJ, Byun JS, Wong MM, Wakano C, Taylor T, Bilke S et al. Genome-wide profiles of CtBP link metabolism with genome stability and epithelial reprogramming in breast cancer. Nat Commun 2013; 4: 1449.
Shan J, Zhao W, Gu W . Suppression of cancer cell growth by promoting cyclin D1 degradation. Mol Cell 2009; 36: 469–476.
Abbas T, Dutta A . p21 in cancer: intricate networks and multiple activities. Nat Rev Cancer 2009; 9: 400–414.
Ward PS, Thompson CB . Metabolic reprogramming: a cancer hallmark even warburg did not anticipate. Cancer Cell 2012; 21: 297–308.
Jeong SM, Lee A, Lee J, Haigis MC . SIRT4 protein suppresses tumor formation in genetic models of Myc-induced B cell lymphoma. J Biol Chem 2014; 289: 4135–4144.
Zhdanov AV, Waters AH, Golubeva AV, Dmitriev RI, Papkovsky DB . Availability of the key metabolic substrates dictates the respiratory response of cancer cells to the mitochondrial uncoupling. Biochim Biophys Acta 2014; 1837: 51–62.
Csibi A, Fendt SM, Li C, Poulogiannis G, Choo AY, Chapski DJ et al. The mTORC1 pathway stimulates glutamine metabolism and cell proliferation by repressing SIRT4. Cell 2013; 153: 840–854.
Jeong SM, Xiao C, Finley LW, Lahusen T, Souza AL, Pierce K et al. SIRT4 has tumor-suppressive activity and regulates the cellular metabolic response to DNA damage by inhibiting mitochondrial glutamine metabolism. Cancer Cell 2013; 23: 450–463.
Le A, Lane AN, Hamaker M, Bose S, Gouw A, Barbi J et al. Glucose-independent glutamine metabolism via TCA cycling for proliferation and survival in B cells. Cell Metab 2012; 15: 110–121.
Lu P, Ma D, Chen Y, Guo Y, Chen GQ, Deng H et al. L-glutamine provides acid resistance for Escherichia coli through enzymatic release of ammonia. Cell Res 2013; 23: 635–644.
Haigis MC, Mostoslavsky R, Haigis KM, Fahie K, Christodoulou DC, Murphy AJ et al. SIRT4 inhibits glutamate dehydrogenase and opposes the effects of calorie restriction in pancreatic beta cells. Cell 2006; 126: 941–954.
Consortium EP, Bernstein BE, Birney E, Dunham I, Green ED, Gunter C et al. An integrated encyclopedia of DNA elements in the human genome. Nature 2012; 489: 57–74.
Santo-Domingo J, Demaurex N . Perspectives on: SGP symposium on mitochondrial physiology and medicine: the renaissance of mitochondrial pH. J Gen Physiol 2012; 139: 415–423.
Weinberg F, Hamanaka R, Wheaton WW, Weinberg S, Joseph J, Lopez M et al. Mitochondrial metabolism and ROS generation are essential for Kras-mediated tumorigenicity. Proc Natl Acad Sci USA 2010; 107: 8788–8793.
Straza MW, Paliwal S, Kovi RC, Rajeshkumar B, Trenh P, Parker D et al. Therapeutic targeting of C-terminal binding protein in human cancer. Cell Cycle 2010; 9: 3740–3750.
Hilbert BJ, Grossman SR, Schiffer CA, Royer WE Jr . Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design. FEBS Lett 2014; 588: 1743–1748.
Barry MA, Eastman A . Endonuclease activation during apoptosis: the role of cytosolic Ca2+ and pH. Biochem Biophys Res Commmun 1992; 186: 782–789.
Casey JR, Grinstein S, Orlowski J . Sensors and regulators of intracellular pH. Nat Rev Mol Cell Biol 2010; 11: 50–61.
McBrian MA, Behbahan IS, Ferrari R, Su T, Huang TW, Li K et al. Histone acetylation regulates intracellular pH. Mol Cell 2013; 49: 310–321.
Tamarappoo BK, Joshi S, Welbourne TC . Interorgan glutamine flow regulation in metabolic acidosis. Miner Electrolyte Metab 1990; 16: 322–330.
Fjeld CC, Birdsong WT, Goodman RH . Differential binding of NAD+ and NADH allows the transcriptional corepressor carboxyl-terminal binding protein to serve as a metabolic sensor. Proc Natl Acad Sci USA 2003; 100: 9202–9207.
Zhang Q, Wang SY, Fleuriel C, Leprince D, Rocheleau JV, Piston DW et al. Metabolic regulation of SIRT1 transcription via a HIC1:CtBP corepressor complex. Proc Natl Acad Sci USA 2007; 104: 829–833.
Kajimura S, Seale P, Tomaru T, Erdjument-Bromage H, Cooper MP, Ruas JL et al. Regulation of the brown and white fat gene programs through a PRDM16/CtBP transcriptional complex. Genes Dev 2008; 22: 1397–1409.
Di LJ, Fernandez AG, De Siervi A, Longo DL, Gardner K . Transcriptional regulation of BRCA1 expression by a metabolic switch. Nat Struct Mol Biol 2010; 17: 1406–1413.
Jack BH, Pearson RC, Crossley M . C-terminal binding protein: a metabolic sensor implicated in regulating adipogenesis. Int J Biochem Cell Biol 2011; 43: 693–696.
Siles L, Sanchez-Tillo E, Lim JW, Darling DS, Kroll KL, Postigo A . ZEB1 imposes a temporary stage-dependent inhibition of muscle gene expression and differentiation via CtBP-mediated transcriptional repression. Mol Cell Biol 2013; 33: 1368–1382.
Jack BH, Crossley M . GATA proteins work together with friend of GATA (FOG) and C-terminal binding protein (CTBP) co-regulators to control adipogenesis. J Biol Chem 2010; 285: 32405–32414.
Yuneva M, Zamboni N, Oefner P, Sachidanandam R, Lazebnik Y . Deficiency in glutamine but not glucose induces MYC-dependent apoptosis in human cells. Jo Cell Biol 2007; 178: 93–105.
Son J, Lyssiotis CA, Ying H, Wang X, Hua S, Ligorio M et al. Glutamine supports pancreatic cancer growth through a KRAS-regulated metabolic pathway. Nature 2013; 496: 101–105.
Wang L, Teng R, Di L, Rogers H, Wu H, Kopp JB et al. PPARalpha and Sirt1 mediate erythropoietin action in increasing metabolic activity and browning of white adipocytes to protect against obesity and metabolic disorders. Diabetes 2013; 62: 4122–4131.
Acknowledgements
We would like to thank the students and colleagues from Institute of Chinese Medical Sciences of University of Macau for their generous help and thank Runfa Wang and Jie Wang from Professor Guozhen Cui’s laboratory (ZunYi Medical University, Zhuhai campus) for providing generous help in mouse work. SRG2013-00044-FHS from University of Macau; FDCT/088/2014/A2 from FDCT of Macau; NSFC 81172591 from General Program of National Natural Science Foundation of China.
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Competing interests
The authors declare no conflict of interest.
Additional information
Edited by A Finazzi-Agrò
Supplementary Information accompanies this paper on Cell Death and Disease website
Supplementary information
Rights and permissions
Cell Death and Disease is an open-access journal published by Nature Publishing Group. This work is licensed under a Creative Commons Attribution 4.0 International Licence. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons licence, users will need to obtain permission from the licence holder to reproduce the material. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0
About this article
Cite this article
Wang, L., Zhou, H., Wang, Y. et al. CtBP maintains cancer cell growth and metabolic homeostasis via regulating SIRT4. Cell Death Dis 6, e1620 (2015). https://doi.org/10.1038/cddis.2014.587
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1038/cddis.2014.587
- Springer Nature Limited
This article is cited by
-
Aldolase B attenuates clear cell renal cell carcinoma progression by inhibiting CtBP2
Frontiers of Medicine (2023)
-
Targeting glutamine metabolism in hepatic stellate cells alleviates liver fibrosis
Cell Death & Disease (2022)
-
C-terminal binding protein 2 promotes high-glucose-triggered cell proliferation, angiogenesis and cellular adhesion of human retinal endothelial cell line
International Ophthalmology (2022)
-
Local DNA methylation helps to regulate muscle sirtuin 1 gene expression across seasons and advancing age in gilthead sea bream (Sparus aurata)
Frontiers in Zoology (2020)
-
CtBP promotes metastasis of breast cancer through repressing cholesterol and activating TGF-β signaling
Oncogene (2019)