Abstract
The HIV-1 accessory protein Vpu enhances virus release by counteracting the host restriction factor tetherin. To further understand the role of host cell proteins in Vpu function, we carried out yeast two-hybrid screening and identified a previously reported Vpu-interacting host factor, small glutamine-rich tetratricopeptide repeat-containing protein (SGTA). While RNAi-mediated depletion of SGTA did not significantly affect levels of tetherin or virus release efficiency, we observed that overexpression of SGTA inhibited HIV-1 release in a Vpu- and tetherin-independent manner. Overexpression of SGTA in the presence of Vpu, but not in its absence, resulted in a marked stabilization and cytosolic relocalization of a 23-kDa, non-glycosylated tetherin species. Coimmunoprecipitation studies indicated that non-glycosylated tetherin is stabilized through the formation of a ternary SGTA/Vpu/tetherin complex. This accumulation of non-glycosylated tetherin is due to inhibition of its degradation, independent of the ER-associated degradation (ERAD) pathway. Because the SGTA-stabilized tetherin species is partially localized to the cytosol, we propose that overexpression of SGTA in the presence of Vpu blocks the translocation of tetherin across the ER membrane, resulting in cytosolic accumulation of a non-glycosylated tetherin species. Although our results do not provide support for a physiological function of SGTA in HIV-1 replication, they demonstrate that SGTA overexpression regulates tetherin expression and stability, thus providing insights into the function of SGTA in ER translocation and protein degradation.
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Introduction
Human immunodeficiency virus type 1 (HIV-1), the causative agent of AIDS, encodes three essential structural polyproteins (Gag, Pol and Env), two regulatory proteins (Tat and Rev) and four accessory proteins (Vif, Vpr, Vpu and Nef)1. The vpu gene is present in HIV-1 and certain simian immunodeficiency viruses (SIVs; SIVgsn, SIVmus, SIVmon) but not in HIV-2 or other SIVs. Vpu is a 16-kDa, type I integral membrane phosphoprotein that is expressed from a bicistronic mRNA together with the Env glycoprotein2. Vpu contains an amino-terminal transmembrane (TM) domain and a carboxy-terminal cytoplasmic tail (CT). The CT of Vpu consists of two α-helices linked by a short loop. Two serine residues (S52 and S56) that undergo phosphorylation to recruit β-TrCP, a key component of the SkpI-Cullin-F-box E3 ubiquitin ligase complex, are located in the short loop3. Vpu is primarily localized in the ER and Golgi and also to some extent at the plasma membrane4.
The two primary functions of Vpu are (i) degradation of CD4, the primary receptor for HIV-1 and other primate lentiviruses5,6,7 and (ii) enhancement of the release of newly formed virus particles from the cell surface by inhibiting the activity of the host restriction factor tetherin/BST-2/CD317/HM1.24 (hereafter referred to as tetherin)8,9. The degradation of CD4 involves the interaction of Vpu and CD4 via their cytoplasmic domains, followed by recruitment of β-TrCP to the Vpu-CD4 complex, which leads to ubiquitylation and proteasomal degradation of CD410. In this case, Vpu acts as a linker between CD4 and β-TrCP. In contrast, enhancement of virus release involves the TM domain of Vpu to counteract the antiviral activity of tetherin11. Vpu also downregulates the expression of major histocompatibility complex class II12 and tetraspanin proteins13,14 from the cell surface. It has been reported that Vpu also protects HIV-1-infected cells from antibody-dependent cell-mediated cytotoxicity (ADCC) through down-regulation of CD4 and tetherin15.
Tetherin is an interferon-inducible protein that inhibits virus release by trapping mature virions on the cell surface8,9. It is an ~180 amino acid, type-II integral membrane protein that contains a short, N-terminal CT domain, a TM domain, a rod-like coil-coil ectodomain and a glycosylphosphatidylinositol (GPI)-anchored C-terminus16. Tetherin is localized in lipid rafts at the cell surface and on intracellular membranes16. Tetherin inhibits the release of not only HIV-1 but also that of a wide variety of enveloped viruses including other retroviruses, herpesviruses, filoviruses and arenaviruses17,18,19. Several lentiviral proteins have acquired the ability to antagonize the antiviral activity of tetherin; these include Vpu, Env and Nef in the case of HIV-1, HIV-2 and SIV, respectively. Several mechanisms have been proposed for the Vpu-mediated downregulation of tetherin. Vpu (i) removes tetherin from sites of virus budding, (ii) enhances degradation of tetherin and (iii) down-regulates cell surface tetherin expression. The down regulation of cell surface tetherin by Vpu is in part due to slowing down the plasma membrane access of newly synthesized tetherin by trapping within the Golgi network. Vpu-induced downregulation of tetherin cell-surface expression is also associated with a ubiquitin-dependent lysosomal degradation through the ESCRT machinery that involves the recruitment of the β-TRCP E3 ubiquitin ligase (reviewed in20,21).
The small glutamine-rich tetratricopeptide repeat (TPR)-containing protein α (SGTA) contains three TPR domains, a 34-amino acid structural motif consisting of eight loosely conserved amino acid residues that form antiparallel α-helical hairpins and serve as scaffolds to mediate protein-protein interactions. SGTA is a ubiquitously expressed co-chaperone that binds directly to Hsp70 and Hsp9022. SGTA also interacts with the androgen23,24, glucocorticoid24 and progesterone receptors24 and negatively regulates their activity. Knockdown or depletion of SGTA enhances receptor activity, whereas its overexpression suppresses receptor function24. SGTA was identified as a cellular binding partner for several viral proteins: HIV-1 Vpu25,26,27, severe acute respiratory syndrome coronavirus protein 7a28, Rec protein of human endogenous retrovirus K29 and NS-1 of parvovirus H-130. The TPR domain of SGTA was shown to interact with these viral accessory proteins. SGTA is reportedly involved in several cellular functions including cell division, apoptosis, intracellular transport, molecular co-chaperoning and virus assembly and release. Accumulating evidence suggests the involvement of SGTA in a variety of cancers (reviewed in31,32).
Recent reports demonstrate a crucial role for SGTA in quality control of misfolded ER proteins or mislocalized membrane proteins. SGTA contains a noncanonical ubiquitin-like binding domain that interacts with Ubl4b, a component of the Bag6 complex. This interaction recruits SGTA to the Bag6 complex. It was suggested that the interaction of SGTA with Bag6 is required to promote the degradation of mislocalized proteins by ERAD33. In contrast, studies from High’s lab showed that for degradation of mislocalized membrane proteins, SGTA competes with the Bag6 complex for cytosolic mislocalized membrane proteins (MLPs) and prevents the ubiquitylation of specific precursors34. When SGTA is overexpressed, the efficient removal of MLPs by proteasomal degradation is delayed, resulting in their increased steady-state levels and cytosolic aggregation34. In another report, Leznicki et al. showed that overexpressed SGTA binding to Rpn13, an intrinsic ubiquitin receptor of the 26S proteasome regulatory subunit, resulted in an increase in steady-state levels of MLPs due to escape from proteasomal degradation35. It has been reported that SGTA and its yeast homolog Sgt2 promote the insertion of tail-anchored proteins into the ER membrane by direct interaction with a hydrophobic substrate36.
SGTA was first identified as a Vpu-interacting protein25. Overexpressed SGTA was reported to interact with HIV-1 Gag in a manner that could be reversed by Vpu. It was proposed that in the absence of Vpu, SGTA interacts with HIV-1 Gag and forms a complex that is inhibitory to HIV-1 release. In the presence of Vpu, due to stable interactions between SGTA and Vpu, the SGTA-Gag interactions are abrogated and the defect imposed by SGTA overexpression is reversed. Dutta and Tan further reported that the TPR domain of SGTA is sufficient for the inhibition of HIV-1 particle release27.
In this study, we performed a yeast two-hybrid screen with HIV-1 Vpu as bait with the aim of identifying Vpu-interacting proteins to better understand Vpu function. One of the proteins identified in this screen was SGTA. Because previous work on SGTA did not evaluate the effect of SGTA depletion on HIV-1 assembly and release and did not examine a possible connection between Vpu, SGTA and tetherin, we investigated the effect of SGTA depletion and overexpression on HIV-1 particle production in the presence and absence of Vpu and tetherin. We confirmed that SGTA overexpression impairs HIV-1 release; however, this phenomenon was independent of Vpu and tetherin expression. While we observed that SGTA depletion did not significantly impact virus release or Vpu-mediated tetherin degradation, we demonstrated that SGTA overexpression induced a marked stabilization and cytosolic accumulation of a non-glycosylated, 23-kDa form of tetherin. We propose that the accumulation of 23-kDa tetherin is not a result of inhibition of ERAD but likely due to a block in the translocation of tetherin across the ER membrane.
Results
Confirmation of SGTA as a Vpu-interacting protein by Y2H Screening
To identify cellular factors involved in Vpu function, we carried out yeast two-hybrid (Y2H) screening using full-length Vpu as bait (for details, see experimental procedures). We identified five Vpu-interacting proteins, including SGTA, which was previously reported to bind Vpu25. Callahan et al. previously observed that SGTA overexpression inhibited HIV-1 release, but the mechanism of action was not established. Also, this previous study was performed before tetherin was identified as the key cellular protein counteracted by Vpu to stimulate virus release. Thus, in this study, we investigated the role of SGTA in Vpu-mediated tetherin degradation and HIV-1 release.
Knockdown of SGTA has no effect on HIV-1 release
To investigate whether endogenous SGTA plays a role in HIV-1 release, we carried out knockdown experiments in HeLa cells. We used single or pooled siRNAs from three different sources (Sigma, Ambion and Qiagen). An SGTA knockdown efficiency of up to 80% was achieved (Fig. 1A,C). Under these conditions, there was no significant effect on virus release for HIV-1 molecular clones either expressing (WT) or not expressing (delVpu) the HIV-1 accessory protein Vpu (Fig. 1A,B). The knockdown of SGTA also had little or no effect on the expression of tetherin and no obvious toxicity to the cells was observed as determined by unchanged levels of tubulin expression (Fig. 1A).
Overexpression of SGTA inhibits HIV-1 release in a Vpu-independent fashion
To investigate the effect of SGTA overexpression on HIV-1 particle release, we cotransfected cells with a vector expressing FLAG-tagged SGTA along with molecular clones encoding WT or Vpu-defective HIV-1. One day posttransfection, virus was concentrated and cell and viral lysates were subjected to western blot analysis. As shown previously25,27, overexpression of SGTA reduced WT HIV-1 particle production over four-fold and that of delVpu HIV-1 two-fold in HeLa cells (Fig. 2A,C). This reduction in virus release in HeLa cells was accompanied by an approximately two-fold reduction in the total levels of cellular Gag (data not shown) and a five-fold reduction in Gag processing, as measured by the relative ratio of p24 (CA) to Pr55Gag (p55), for both WT and delVpu HIV-1 (Fig. 2A,E). In 293T cells, overexpression of SGTA reduced the release of both WT and delVpu HIV-1 by about two-fold (Fig. 2B,D). The defects in Gag processing in 293T cells were minimal with WT HIV-1; however, a two-fold reduction in the ratio of p24 to p55 was observed with delVpu HIV-1 (Fig. 2B,F). Total levels of cell-associated Gag were reduced by ~40% in 293T cells at the highest SGTA DNA input (data not shown). The extent of reduction in virus release imposed by SGTA overexpression was similar for WT and delVpu and was also similar in HeLa cells, which express tetherin and 293T cells, which do not. These results indicate that the ability of SGTA overexpression to inhibit HIV-1 particle production is not linked to Vpu or tetherin expression. To examine whether the inhibition of HIV-1 release resulted from the formation of a stable Gag-SGTA complex, we tested whether SGTA is incorporated into virions by probing released virions for SGTA. This analysis indicated that overexpressed, FLAG-tagged SGTA is not incorporated into virions at detectable levels (data not shown).
Overexpression of SGTA in the presence of Vpu increases the levels of a 23-kDa form of tetherin
During the course of our overexpression experiments designed to measure the effect of SGTA overexpression on virus release, we made the unexpected observation that SGTA overexpression in the context of WT HIV-1 led to a marked increase in the levels of a 23-kDa form of tetherin (Fig. 3A, lanes 3 and 4, bottom panel, arrow). This phenomenon required substantially less SGTA expression vector input (0.13 μg) relative to the amount needed to inhibit virus production (Fig. 2). The SGTA-mediated increase in levels of 23-kDa tetherin observed in the context of WT HIV-1 was much lower in the context of HIV-1 lacking Vpu (delVpu; Fig. 3A, compare lanes 3 and 4 with lanes 7 and 8). At these lower inputs of SGTA expression vector (0.13 and 0.25 μg), only a ~20% reduction in WT HIV-1 release was observed (data not shown). As expected8,9, in the absence of Vpu (Fig. 3A, lanes 6–8), high molecular weight tetherin bands were observed due to lack of Vpu-induced tetherin degradation. The results presented in Fig. 3A demonstrate that in the presence of Vpu, but not in its absence, SGTA overexpression markedly increases the abundance of a 23-kDa species of tetherin.
The 23-kDa tetherin species is not glycosylated
Tetherin contains two major sites of N-linked glycosylation, residues Asn65 and Asn9237. To determine whether the 23-kDa tetherin species, whose abundance is increased by SGTA in the presence of Vpu, is glycosylated, we compared the expression pattern of WT and glycosylation-defective tetherin mutants. We expressed both single mutants (N65A and N92A) and a double mutant (NN-AA) in the absence and presence of SGTA and Vpu. Both single mutants showed a strong band at ~25 kDa in the absence of SGTA. In the presence of SGTA, the 23-kDa tetherin species was observed in both the single mutants as observed with the WT (Fig. 3B). The molecular mass of the non-glycosylated double mutant NN-AA is similar to that of the form of tetherin whose abundance is increased by SGTA in the presence of Vpu. These observations suggest that the 23-kDa form of tetherin that is apparently stabilized by SGTA is a non-glycosylated species.
The C-terminus of SGTA is required for enhanced expression of the 23-kDa tetherin species
SGTA contains an N-terminal dimerization domain that interacts with Ubl4A/Bag6, a central TPR domain that interacts with chaperones Hsp70 and Hsp90 and a glutamine-rich C-terminal domain that interacts with hydrophobic precursor proteins33,38,39 (Fig. 4A). To identify which domain of SGTA is required for increased levels of the non-glycosylated tetherin species, we used a panel of deletion mutants containing or lacking individual domains33 (Fig. 4A). 293T cells were co-transfected with FLAG-tagged WT SGTA or SGTA truncation mutants and tetherin and Vpu expression vectors. As demonstrated above, the 23-kDa tetherin species was highly expressed in the presence of WT SGTA (Fig. 4B, lane 3, arrow). While the SGTA TPR domain was expressed at a level similar to that of WT SGTA, the TPR domain alone did not increase the amount of 23-kDa tetherin (Fig. 4B, lane 4). Likewise, the N-terminal domain alone (Nt) or the N-terminal domain plus the TPR domain (N200) did not induce elevated levels of the non-glycosylated tetherin species. In contrast, overexpressing the C-terminal domain (Ct) alone or in combination with the TPR domain (delN) resulted in increased expression of the non-glycosylated tetherin species (Fig. 4B, lanes 5 and 6). As reported previously33, the Nt and Ct fragments were not detected by western blotting in cell lysates (Fig. 4B). To verify their expression, we immunostained SGTA with anti-FLAG antibodies and, as shown in Fig. S1, we could detect the expression of SGTA Nt and Ct domains at a level comparable to that of WT SGTA. From these results, we can conclude that the C-terminus of SGTA is necessary and sufficient for the SGTA-mediated increase in expression of the non-glycosylated tetherin species.
Membrane-proximal basic residues of Vpu are required for the SGTA-mediated increase in non-glycosylated tetherin expression
Next, we asked which residues of Vpu are required for the SGTA-mediated increase in non-glycosylated tetherin levels. Vpu is an oligomeric type I integral membrane protein with a hydrophilic, highly basic domain projecting from the cytoplasmic membrane face40. This basic patch (Vpu residues R30, K31 and R34) has previously been implicated in Vpu binding to SGTA27. We mutated all three of these basic residues, either together (RKR-AAA) or individually (R30A, K31A, R34A). We co-expressed tetherin and SGTA in the presence of WT or mutant Vpu in 293T cells. As shown above, in the presence of SGTA and WT Vpu, high levels of non-glycosylated tetherin were detected (Fig. 4C, lane 1). In contrast, in the presence of the RKR Vpu mutant, the non-glycosylated tetherin species did not accumulate (Fig. 4C, lane 2). Of the three individual basic residue mutants, R30A was the most defective in its ability to increase non-glycosylated tetherin expression (Fig. 4C, lane 3). The triple mutant was also partially defective in its ability to degrade the glycosylated forms of tetherin, (~30–36 kDa) compared to the non-phosphorylated Vpu mutant (SS-AA)3 (Fig. 4C). However, unlike the RKR-AAA triple mutant, all single mutants down-regulate the highly glycosylated tetherin species (Fig. 4C). Because of its inability to degrade tetherin, the RKR-AAA triple and SS-AA mutants were unable to rescue virus release in the presence of tetherin (data not shown). The expression of all Vpu mutants was comparable to, or higher than, that of WT (Fig. 4C).
The transmembrane domain of human tetherin is required for the SGTA-mediated increase in 23-kDa tetherin expression
Having identified the domains of SGTA and the residues of Vpu that contribute to the SGTA-mediated elevation in expression of non-glycosylated tetherin, we next wanted to identify which domain of tetherin is essential for this phenomenon. We constructed several tetherin mutants to identify the domain(s) required for this increased expression. As shown in Fig. 3B, both single non-glycosylation mutants (N65A, N92A) were stabilized by SGTA overexpression in the presence of Vpu. The non-dimerizing mutant (CCC)37 and ubiquitylation mutants (2STS, K17,20A and STSKK)41 showed increased levels of the non-glycosylated tetherin species in the presence of Vpu and SGTA (Fig. S2) suggesting that neither dimerization nor ubiquitylation of tetherin is required for increased expression of 23-kDa tetherin induced by SGTA. Expression of the tetherin cytoplasmic tail deletion mutant (delCT) was increased by SGTA and Vpu (Fig. 4D) suggesting that the cytoplasmic tail is not required for SGTA-mediated stabilization of non-glycosylated tetherin. The GPI-anchor mutant (delGPI)8 expressed the non-glycosylated tetherin species even in the absence of SGTA (Fig. 4D). Further studies will be required to define the requirement of the GPI-anchor for SGTA-mediated stabilization of tetherin. We also tested two forms of tetherin that are not downregulated by Vpu due to a loss of Vpu-tetherin interaction: the tetherin from African green monkey (Agm) and a chimeric tetherin containing the Agm transmembrane domain in human tetherin (Hu-Agm)11. As shown in Fig. 4D, neither the Agm tetherin nor the Hu-Agm chimera was stabilized by SGTA. These results indicate that the transmembrane domain of human tetherin is essential for SGTA-mediated stabilization of the non-glycosylated tetherin species, most likely because this domain is critical for the tetherin-Vpu interaction.
The non-glycosylated tetherin species co-immunoprecipitates with SGTA in the presence of WT Vpu but not in the presence of the membrane-proximal basic residue Vpu mutant
The data presented in Fig. 4D suggest that the tetherin-Vpu interaction is required for the ability of SGTA to increase expression of the non-glycosylated species. Because SGTA is a Vpu-interacting protein, this raises the possibility that a ternary SGTA-Vpu-tetherin complex forms in cells expressing these three proteins. To test this hypothesis, we carried out co-immunoprecipitation assays. 293T cells were transfected with FLAG-tagged SGTA in the absence and presence of Vpu (WT and RKR mutant) and HA-tagged tetherin. As shown in Fig. 5, although several forms of tetherin are expressed in cells, only the 23-kDa tetherin species is co-immunoprecipitated with SGTA in the presence of Vpu. We also observed Vpu in the co-immnoprecipitate (Fig. 5). Compared to WT Vpu, only 60 ± 5.2% of the Vpu RKR mutant was co-immunoprecipitated by SGTA when normalized to input (average of three independent experiments). These results support the existence of a ternary SGTA-Vpu-tetherin interaction.
The non-glycosylated tetherin species localizes to the cytosol
Tetherin is a type II membrane protein that contains two membrane anchors, a transmembrane domain at the N-terminus and a GPI-anchor at the C-terminus16. Because of the two membrane anchors, tetherin is highly membrane-associated, specifically in cholesterol- and sphingolipid-rich membrane microdomains16. To better understand the mechanism by which SGTA and Vpu expression increases the levels of 23-kDa tetherin, we performed immunofluorescence and membrane fractionation experiments. HA-tetherin was expressed in 293T cells in either the absence or presence of Vpu and SGTA and cells were fixed and stained with anti-HA antibody. As shown in Fig. 6A, human tetherin is localized both on the cell surface and in intracellular compartments. As reported9, when Vpu is co-expressed with tetherin, the cell surface expression of tetherin appears to be reduced due to Vpu-mediated down-regulation. As shown earlier42, tetherin and Vpu colocalize in the intracellular compartments (Fig. 6A). Upon SGTA overexpression, the localization pattern of tetherin is not altered. However, in the presence of both Vpu and SGTA, the tetherin localization pattern shifts markedly to cytosolic and partially ER (as indicated by colocalization with the ER marker calnexin) (Fig. 6A right panel). Further, we overexpressed individual SGTA domains and examined localization of tetherin in the presence of Vpu. As shown in Fig. 6B, in the presence of WT SGTA or SGTA Ct, the cytosolic staining of tetherin increased, whereas in the presence of Nt or TPR domains of SGTA tetherin colocalized with Vpu in the intracellular compartments as observed in the absence of SGTA (Fig. 6A, left panel, second row). These results suggest that the non-glycosylated tetherin species is partially mislocalized to the cytosol in the presence of Vpu and SGTA and that the C-terminal domain of SGTA is critical for this relocalization.
To extend this microscopy-based localization analysis, we performed biochemical fractionation studies. 293T cells expressing tetherin alone or coexpressing tetherin and Vpu and SGTA were sonicated and separated into cytosolic and membrane fractions. As expected, in the absence of SGTA, tetherin fractionated to membranes (Fig. 6C, lanes 2 and 5). However, in the presence of SGTA, the non-glycosylated tetherin species became highly expressed and ~50% fractionated to the cytosol (Fig. 6C, lanes 3 and 6). These biochemical results support the increased cytosolic localization of tetherin observed in the microscopy analysis and suggest that in the presence of SGTA and Vpu tetherin partially redistributes to the cytosol. Interestingly, in the absence of SGTA, Vpu fractionates to membranes (Fig. 6C, lanes 4 and 5), but in the presence of SGTA it partially fractionates to the cytosol (Fig. 6C, lane 3). The integral membrane protein transferrin receptor (TR) was present exclusively in membrane fractions (Fig. 6C), demonstrating that cytosolic fractions were not contaminated with membrane-associated material. As reported26, SGTA was present exclusively in the cytosolic fractions (Fig. 6C, lane 3). We also tested the impact of SGTA overexpression on cytosolic localization of the non-glycosylated tetherin mutant (NN-AA). As shown above, in the presence of SGTA, the WT 23-kDa tetherin species partially fractionates to the cytosol (Fig. 6D, lanes 1 and 2). Interestingly, although SGTA and Vpu coexpression does not increase the levels of the 23-kDa NN-AA mutant (Figs 3B and 6D), coexpression of SGTA and Vpu results in a significant increase in the levels of the non-glycosylated mutant in the cytosol (Fig. 6D, lanes 3 and 4). This further confirms that the cytosolic localization of the non-glycosylated tetherin species is SGTA-dependent.
SGTA overexpression does not interfere with Vpu-mediated degradation of CD4
To determine the effects of SGTA overexpression on the behavior of another cellular protein downregulated by Vpu, we examined the effect of SGTA overexpression on CD4 levels. It is well established that the plasma membrane protein CD4 is downregulated by Vpu at least in part through a proteasomal degradation pathway7, more specifically by ERAD43. We expressed CD4 in 293T cells in the absence and presence of Vpu and SGTA. Unlike tetherin, CD4 was degraded by Vpu to a similar extent in the presence and absence of overexpressed SGTA (Fig. S3). This result also suggests that overexpression of SGTA does not interfere with ERAD, at least for the substrates tested.
Accumulation of the non-glycosylated tetherin species is not due to inhibition of ERAD
It has been reported that Vpu induces the ERAD of tetherin44. We tested if the accumulation of the non-glycosylated tetherin species in the presence of SGTA is due to inhibition of the ERAD pathway. We used shRNA to deplete Bag6, a central component of the ERAD complex45. As shown in Fig. 7A, Bag6 depletion is highly efficient. In Bag6-depleted cells, the 23-kDa tetherin species is observed at levels similar to those in cells transfected with non-target shRNA. Thus, we can conclude that Bag6 is not required for SGTA-mediated stabilization of non-glycosylated tetherin. We also inhibited the ERAD pathway by treating cells with kifunensine, an ERAD inhibitor46. Kifunensine is an alkaloid compound that suppresses ER-associated mannosidase I activity47. Tetherin is modified with high-mannose oligosaccharide side chains in the ER; these are trimmed by the mannosidase I enzyme and modified to complex side chains in the Golgi48. Mannose trimming from the N-glycans is also essential for targeting misfolded glycoproteins for ERAD49. In the presence of kifunensine, there is a reduction in highly glycosylated tetherin, indicating that the compound is active. However, kifunensine treatment did not increase the levels of the 23-kDa tetherin species. Further, kifunensine had no effect on the SGTA-mediated stabilization of non-glycosylated tetherin (Fig. 7B, lanes 5 and 6 and Fig. 7C), suggesting that accumulation of the non-glycosylated tetherin species is not a result of inhibition of ERAD by SGTA overexpression.
In the presence of Vpu, SGTA overexpression stabilizes non-glycosylated tetherin
To elucidate the mechanism by which SGTA increases expression of the non-glycosylated tetherin species, we performed pulse-chase analysis. 293T cells expressing tetherin alone or coexpressing tetherin with Vpu or Vpu + SGTA were pulse-labeled for 30 min and chased for 0, 0.5, 1, 2, 4 h in unlabeled media. In the absence of SGTA, both 23-kDa and 26-kDa species of tetherin underwent degradation; however, in the presence of SGTA and Vpu, the degradation of the 23-kDa tetherin species was much less rapid (Fig. 8). As a result, we observed a striking increase in the ratio of 23- to 26-kDa forms of tetherin over time in cells overexpressing SGTA and Vpu. In contrast, the ratio of 23- to 26-kDa forms of tetherin was stable in cells expressing tetherin alone or tetherin plus Vpu. These results indicate that in the presence of Vpu, SGTA overexpression prevents the degradation of non-glycosylated tetherin leading to its stabilization and time-dependent accumulation.
Discussion
In our Y2H screen, we identified SGTA as a Vpu-binding protein, consistent with a previous report25. Earlier studies showed that overexpression of SGTA disrupted HIV-1 release25,27, raising the possibility that SGTA overexpression abrogated Vpu-mediated tetherin antagonism. Because these earlier studies preceded the discovery of tetherin as the primary target of Vpu in enhancing virus particle release, we revisited this issue here. While we confirmed that SGTA overexpression did indeed interfere with HIV-1 release, several observations suggest that this phenomenon is not due to an effect on Vpu-mediated tetherin degradation: 1) SGTA overexpression inhibits the release of both Vpu(+) and Vpu(−) virus, 2) the effect of SGTA overexpression was seen in both tetherin-positive (HeLa) and tetherin-negative (293T) cells and 3) the inhibition of virus release imposed by SGTA overexpression is accompanied by a defect in Pr55Gag processing to CA, which is not a phenotype associated with loss of Vpu expression in tetherin-expressing cells8,50. As suggested in earlier studies, it is possible that SGTA could directly bind to HIV-1 Gag and form a complex that inhibits virus assembly25,27. In contrast to SGTA overexpression, knockdown of SGTA expression by ~three-fold has no significant effect on HIV-1 release in either HeLa or 293T cells, indicating that endogenous levels of SGTA are not sufficient to interfere with Gag assembly. These results also suggest that endogenous SGTA, at least in the cell types tested, does not significantly affect tetherin expression. At this time, we cannot exclude the possibility that our SGTA depletions were not sufficiently complete to elicit significant effects on virus assembly and release or on levels of tetherin expression. More complete knockdown of SGTA is poorly tolerated, making complete knockdown difficult to achieve51. Further studies will be required to pinpoint which step(s) in the particle assembly pathway are inhibited by SGTA overexpression.
During the course of the above-described experiments, we made the serendipitous observation that SGTA overexpression led to a marked accumulation of a 23-kDa tetherin species. The size of this product is consistent with that of non-glycosylated tetherin and indeed a tetherin mutant bearing substitutions at the two reported sites of N-linked glycosylation37 co-migrated with the 23-kDa form. The SGTA-mediated accumulation appears to be specific for tetherin, as CD4, another host protein that is degraded by HIV-1 Vpu5,6,7, is unaffected by SGTA overexpression. We identified domains/residues of SGTA, Vpu and tetherin required for the SGTA-mediated accumulation of the non-glycosylated tetherin species. The glutamine-rich C-terminus of SGTA, membrane-proximal basic residues of Vpu and the transmembrane domain of tetherin are essential for the accumulation of non-glycosylated tetherin. The partially cytosolic localization of 23-kDa tetherin, SGTA and Vpu suggests the formation of a ternary SGTA-Vpu-tetherin complex. Indeed, our co-immunoprecipitation experiments show that only non-glycosylated, 23-kDa tetherin, but not the higher-molecular-weight glycosylated forms, co-immunoprecipitated with SGTA in the presence of Vpu.
Because SGTA has been shown to be a component of the ERAD complex33, we initially hypothesized that overexpression of SGTA could disrupt the ERAD process, leading to accumulation of a misfolded, non-glycosylated tetherin species. To test this hypothesis, we disrupted ERAD by depleting Bag6, a central component of the ERAD complex45, or treated cells with kifunensin, an inhibitor of this degradation pathway46. Neither Bag6 depletion nor kifunensin treatment had any effect on the accumulation of 23-kDa tetherin. These results suggest that the accumulation of the non-glycosylated tetherin species is not due to inhibition of the ERAD pathway per se. To track the fate of newly synthesized tetherin in more detail, we performed pulse-chase analysis. In the absence of SGTA overexpression, we observed that both 26-kDa (glycosylated) and 23-kDa (non-glycosylated) tetherin undergo degradation with similar kinetics, leading to a ratio of 26-kDa to 23-kDa forms that remains constant over time. However, SGTA overexpression in the presence of Vpu (but not in its absence) resulted in the much-reduced degradation of the 23-kDa form of tetherin and a time-dependent increase in the ratio of 23- to 26-kDa tetherin species. Together, these findings suggest that overexpression of SGTA in the presence of Vpu leads to the formation of a ternary complex that results in subsequent accumulation of non-glycosylated tetherin in the cytosol.
Accumulating evidence in the literature suggests a role for SGTA in stabilization and cytosolic aggregation of MLPs. The Bag6 complex and SGTA play a key role in determining the fate of MLPs34,52,53,54. The Bag6 complex promotes the polyubiquitylation of MLPs followed by degradation via the proteasome pathway33,53, whereas SGTA was shown to antagonize this process by deubiquitylating MLPs and delaying their degradation, resulting in their accumulation and aggregation in the cytosol34,52. In a recent report, Leznicki et al. showed that SGTA interacts with Rpn13, the intrinsic proteasomal ubiquitin receptor and that overexpression of SGTA resulted in an increase in the association of SGTA and its MLP substrate with the proteasome and, consequently, in an increase in MLP levels. The ability of SGTA overexpression to prevent MLP degradation in the proteasome was disrupted by either overexpressing the C-terminal, SGTA-binding region of Rpn13, or by mutating the TPR domain of SGTA, which interacts with Rpn1335. Overexpression of Bag6 also delayed the process of substrate degradation in a dominant-negative manner55. A single polyubiquitin chain can be captured by both Rpn10 and Rpn13 ubiquitin receptors56,57; based on these observations, Leznicki et al. proposed that Rpn10-bound Bag6 and Rpn13-bound SGTA can modulate the access of MLPs to the proteasome35. Our pulse-chase analysis indicates that the stabilization of 23-kDa tetherin by exogenous SGTA is likely due to a delay in the degradation of SGTA-bound 23-kDa tetherin. Our results add significant new information to these previous studies by showing that the C-terminal domain of SGTA, rather than the TPR domain, can elicit overexpression-induced increases in substrate stability. Our findings also demonstrate a requirement for a viral factor – HIV-1 Vpu – in the regulation of tetherin stability by SGTA. Several recent studies have shown that SGTA expression is upregulated in various types of cancer (reviewed in31,32), although it is not clear whether the increased expression of SGTA is the cause, or a consequence, of the pathogenic process. These observations suggest that there may be physiologically relevant situations (e.g., in cancer) under which SGTA overexpression alters the regulation of SGTA client proteins in a manner similar to that observed in this study. This question warrants further study. Although the physiological relevance of SGTA overexpression in HIV-1 biology is not clear, the inhibition of HIV-1 release induced by SGTA overexpression was observed independent of Vpu and tetherin and was accompanied by a severe defect in Gag processing. Further studies will provide additional insights into the relationship between these viral and host cell factors and the cell biology of protein degradation and ER translocation.
Methods
Plasmids, antibodies and chemicals
The full-length, infectious HIV-1 molecular clone pNL4-358 and the Vpu-defective counterpart NL4-3delVpu2 have been described previously. The codon-optimized Vpu expression plasmid pcDNA-Vphu was used to express the Vpu59. pNL4-3delVpu and pcDNA-Vphu were kindly provided by K. Strebel. The N-terminally HA epitope-tagged tetherin expression vector, the deletion mutants of human tetherin delCT and delGPI, tetherin from African green monkey (agm) and chimeric human tetherin with agm transmembrane domain (Hu-Agm) were described previously8,11 and were generously provided by P. Bieniasz. PCR-based mutagenesis was used to introduce Ala substitutions at three cysteines (C53, C63, C91; referred to as CCC) and two asparagines (N65, N92) and serine, threonine and serine (S2,T3,S4 referred as 2STS), two lysines (K17, K20), and, in combination, serine, threonine and lysine (STSKK) residues in the cytoplasmic tail of tetherin. Anti-HA, anti-FLAG and anti-tubulin antibodies, anti-HA conjugated agarose beads and kifunensine were purchased from Sigma (St. Louis, MO). Anti-human transferrin receptor antibody was purchased from Zymed Laboratories Inc. (San Francisco, CA) and anti-CD4 antibody was from Santa Cruz Biotechnology (Dallas, Texas). Anti-calnexin antibody was from Abcam (Cambridge, MA). Zenon antibody labeling kits and the Alexa Fluor 647 conjugated secondary antibody were from Invitrogen (Grand Island, NY). Anti-SGTA and anti-Bag6 antibodies were raised in rabbit33. Anti-Vpu40, anti-tetherin and anti-HIV-1 Ig were obtained from the NIH AIDS Research and Reference Reagent Program.
Yeast two-hybrid screening
The yeast two-hybrid screen was carried out at Myriad Genetics (Salt Lake City, UT). Briefly, the PNY200 yeast strain60 was co-transformed with linear pGBT.superB DNA61 and bait fragment to obtain recombinant plasmid to express Vpu fused to the GAL4 DNA binding protein (BD). The BK100 yeast strain60 was transformed with a prey cDNA library (isolated from brain, spleen and macrophages), which expresses the various cDNA-encoded proteins as hybrids with the GAL4 transcriptional activation domain (AD). To perform the yeast two-hybrid screen, the PNY200 yeast strain expressing the GAL4-binding domain fusions was mated with the BK100 yeast strain. After mating, the cells are plated onto selective media and if the bait and prey proteins interacted, transcription of two auxotrophic reporter genes (HIS3 and ADE2) with dissimilar promoters occurred62 and colonies were picked from the selection plates and the prey inserts were identified by sequence analysis. To confirm interactions in this screen, the bait and prey plasmids were isolated from yeast diploids and co-transformed into a native yeast strain and a chemiluminescent reporter gene assay system62 was used to monitor the interaction.
Cell culture and transfection
293T and HeLa cell lines were maintained in Dulbecco-modified Eagle’s medium (DMEM) containing 10% or 5% fetal bovine serum (FBS), respectively. One day after plating, the cells were transfected with appropriate plasmid DNA using Lipofectamine 2000 (Invitrogen Corp. Carlsbad, CA) according to the manufacturer’s recommendations. Cells and virus were harvested 24 h posttransfection and used for further analysis.
Virus release assays
To knock down SGTA expression, we used siRNA from three different sources that were pools of four siRNAs (Sigma), three siRNAs (Ambion) or a single siRNA (Qiagen). One day after plating, HeLa cells were transfected with 100 nM non-target or SGTA siRNA with Oligofectamine transfection reagent (Invitrogen). Four hours later, cells were transfected with wild-type (WT) or Vpu-defective pNL4-3 molecular clones. The next day, medium was changed and the siRNA transfection was repeated. One-day later, virions were pelleted in an ultracentrifuge and cell and viral pellets were lysed63. In overexpression experiments, HeLa and 293T cells were co-transfected with pNL4-3 or pNL4-3delVpu in the absence or presence of tetherin and SGTA expression vectors. One-day posttransfection, virions were collected and cell and viral pellets were lysed as above. Viral proteins in cell and virus lysates were immunoblotted with HIV-Ig63 and virus release efficiency was calculated as the amount of virion-associated Gag as a fraction of total (cell- plus virion-associated) Gag.
Western blotting analysis
For immunoblot analyses, cells were washed with PBS and then lysed in a buffer containing 50 mM Tris-HCl (pH 7.4), 150 mM NaCl, 1 mM EDTA, 0.5% Triton X-100 and protease inhibitor cocktail (Roche life sciences, Basel, Switzerland). Proteins were denatured by boiling in sample buffer and subjected to SDS-PAGE, transferred to PVDF membrane and incubated with appropriate antibodies as described in the text. Membranes were then incubated with HRP-conjugated secondary antibodies and chemiluminescence signal was detected by using West Pico or West Femto Chemiluminescence Reagent (Thermoscientific, Waltham, MA). The protein bands were quantified by using Imagelab-Chemidoc (Bio-rad Laboratories, France).
Immunoprecipitation of SGTA
To investigate the interactions between SGTA, Vpu and tetherin we carried out co-immunoprecipitation assays. 293T cells were transfected with FLAG-tagged SGTA in the absence and presence of vectors expressing human tetherin and Vpu (WT and RKR mutant). Twenty-four h post-transfection, cells were lysed in 0.5% IGEPAL and immunoprecipitations were performed with agarose beads conjugated with anti-FLAG antibodies. After a 12-h incubation, complexes were washed with 0.1% IGEPAL and both cell lysates and immunoprecipitated samples were subjected to immunoblotting with anti-FLAG, anti-HA and anti-Vpu antibodies.
Immunofluorescence microscopy
For microscopy studies, 293T cells cultured in chamber slides were transfected with human tetherin in the absence or presence of Vpu and SGTA. Twenty-four h posttransfection, cells were rinsed with PBS and fixed with 3.7% paraformaldehyde in PBS for 30 min. The cells were rinsed with PBS, permeabilized with methanol at −20 °C for 4 min, washed in PBS and incubated with 0.1 M glycine-PBS for 10 min to quench the remaining aldehyde residues. After blocking with 3% BSA-PBS for 30 min, cells were incubated with Zenon Alexa Fluor 488-labeled anti-HA and either Zenon Alexa Fluor 594-labeled anti-Vpu or Zenon Alexa Fluor 594-labeled anti-calnexin appropriately diluted in 3% BSA-PBS for 1 h. In triple antibody staining experiments, cells were first incubated with anti-FLAG antibody diluted in 3% BSA-PBS for 1 h, then cells were washed with PBS three times and then incubated with secondary antibody conjugated with Alexa Fluor 647 diluted in 3% BSA-PBS. After washing with PBS three times, cells were incubated with Zenon Alexa Fluor 488-labeled anti-HA and Zenon Alexa Fluor 594-labeled anti-Vpu. Finally, after washing with PBS three times, cells were mounted with Vectashield mounting media with DAPI (Vector Laboratories) and examined with a Delta-Vision RT microscope.
Pulse-chase analysis
293T cells were transfected with HA-tagged human tetherin in the absence and presence of Vpu and SGTA expression vectors. One day posttransfection, cells were pulse-labeled with [35S]Met-Cys for 30 min and washed with DMEM containing 10% FBS and removed from the dish in the same medium. Cells were split into five equal parts and incubated for 0, 0.5, 1, 2, 4 h. Cells were spun down and lysed in 0.5% IGEPAL containing lysis buffer and immunoprecipitated with anti-HA antibodies and analyzed by SDS-PAGE followed by fluorography64.
Additional Information
How to cite this article: Waheed, A. A. et al. The Vpu-interacting Protein SGTA Regulates Expression of a Non-glycosylated Tetherin Species. Sci. Rep. 6, 24934; doi: 10.1038/srep24934 (2016).
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Acknowledgements
We thank Myriad Genetics (Salt Lake City, UT) for carrying out yeast two-hybrid screening. We thank members of the Freed laboratory for helpful discussion and critical review of the manuscript. We thank K. Strebel and P. Bieniasz for their generous gifts of plasmids. The HIV-1 Ig, anti-Vpu and anti-human tetherin antisera were obtained from the NIH AIDS Research and Reference Reagent Program. Research in the Freed laboratory is supported by the Intramural Research Program of the Center for Cancer Research, National Cancer Institute, NIH and by the Intramural AIDS Targeted Antiviral Program.
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A.A.W. planned, designed and performed the experiments. S.M., M.K., M.M., M.S. and Y.X. helped in mutagenesis and biochemical analyses. Y.Y. provided the SGTA expression plasmids, made valuable suggestions and helped edit the manuscript. E.O.F. coordinated and supervised the project. A.A.W. and E.O.F. wrote the manuscript.
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Waheed, A., MacDonald, S., Khan, M. et al. The Vpu-interacting Protein SGTA Regulates Expression of a Non-glycosylated Tetherin Species. Sci Rep 6, 24934 (2016). https://doi.org/10.1038/srep24934
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DOI: https://doi.org/10.1038/srep24934
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