Abstract
In the boreal forest, the red fox (Vulpes vulpes) is a key species due to its many strong food web linkages and its exploitation of niches that form in the wake of human activities. Recent altitudinal range expansion and a perceived population increase have become topics of concern in Scandinavia, primarily due to the potential impacts of red foxes on both prey and competitor species. However, despite it being a common species, there is still surprisingly little knowledge about the temporal and spatial characteristics of its population dynamics. In this study, we synthesized 12 years of snow-track transect data covering a 27,000-km2 study area to identify factors associated with red fox distribution and population dynamics. Using Bayesian hierarchical regression models, we evaluated the relationships of landscape productivity and climate gradients as well as anthropogenic subsidies with an index of red fox population size and growth rates. We found that landscapes with high human settlement density and large amounts of gut piles from moose (Alces alces) hunting were associated with higher red fox abundances. Population dynamics were characterized by direct density-dependent growth, and the structure of density dependence was best explained by the amount of agricultural land in the landscape. Population equilibrium levels increased, and populations were more stable, in areas with a higher presence of agricultural lands, whereas density-dependent population growth was more prominent in areas of low agricultural presence. We conclude that human land use is a dominant driver of red fox population dynamics in the boreal forest. We encourage further research focusing on contrasting effects of anthropogenic subsidization on predator population carrying capacities and temporal stability, and potential impacts on prey dynamics.
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Introduction
Human land use has dramatically altered the structure and dynamics of natural habitats in biomes across the world (Walther et al. 2002; Foley et al. 2005). Effects of human land use on species distribution and abundance vary in their complexity and direction. Direct effects of human influence may be inevitable outcomes of habitat change (Andrén 1994) and resource management (e.g., Milner et al. 2006) or indirect consequences mediated through changes in community structure (e.g., Prugh et al. 2009). A matter of concern is an observed large-scale and long-term increase in the number and distribution of generalist predators, for example, the red fox (Vulpes vulpes) in Europe (e.g., Vos 1995; Prugh et al. 2009; Selås et al. 2011; Baines et al. 2016), the feral cat (Felis catus) in Australia (Fancourt et al. 2015), or the fisher (Pekania pennanti) in North America (Lapoint et al. 2015). Several ultimate explanations for the increase in generalist predator populations have been discussed, and in the context of our study, findings about the potential role of land use practices are especially relevant (Christiansen 1979; Henttonen 1989; Selås and Vik 2006). Additionally, the role of climate change and mesopredator release have received attention (e.g., Bartoń and Zalewski 2007; Prugh et al. 2009; Elmhagen et al. 2015). These are complementary hypotheses and they have been used in the above mentioned studies to explain increased carrying capacity of red fox populations due to increased resource availability or less intra-guild predation.
Opportunistic and facultative species like the red fox that take advantage of available foods ranging from berries to meat and human waste may successfully exploit niches that form in the wake of human activities. This may subsequently have detrimental effects on competitor- and prey species like pine marten (Martes martes) in the forest or arctic foxes (Vulpes lagopus) in alpine regions (Frafjord et al. 1989; Hersteinsson and MacDonald 1992; Lindstrom et al. 1994; Smedshaug et al. 1999; Kämmerle et al. 2017). Diverse and strong food web linkages of red foxes in the boreal forests have been demonstrated via both experimental and correlative predation studies on roe deer (Capreolus capreolus) and other prey species like grouse (Tetraonidae) and mountain hare (Lepus timidus) (Marcström et al. 1988; Lindstrom et al. 1994; Kauhala et al. 2000; Panzacchi et al. 2009).
The red fox is a very successful habitat generalist, and its distribution range is the largest among carnivores (Hersteinsson and MacDonald 1992). Locally, however, red foxes can turn into specialists and select mosaic landscapes (Pulliainen 1981; Kurki et al. 1998; Güthlin et al. 2013) with relatively high prey densities (Cavallini and Lovari 1991; Panzacchi et al. 2008a; Henden et al. 2014; Carricondo-Sanchez et al. 2016) and such landscapes are often modified by humans. Human settlements will primarily provide red foxes with increased scavenging opportunities (McKinney 2002; Vuorisalo et al. 2014). Secondary (i.e., indirect) effects from anthropogenic land use may be modulated via forestry and agricultural practices that cultivate cereals and grasses. Fields of grass and cereals create habitats for preferred prey (i.e., voles) (Christiansen 1979; Henttonen 1989; Panzacchi et al. 2010; Güthlin et al. 2013; Bogdziewicz and Zwolak 2013) and increase predation success by increasing the amount of habitat edges (Gorini et al. 2012 and references therein). The secondary effects of human land use distribute uniformly throughout the year and are therefore likely to increase overall carrying capacity. Additionally, a marked increase in ungulate abundances in Scandinavia during the last decades has increased the availability of carrion from natural mortality and gut piles (i.e., intestines, lungs, and stomach) left on site after big game hunting (Loison and Langvatn 1998; Stubsjøen et al. 2000; Gomo et al. 2017). Open season for, e.g., moose (Alces alces) starts in September and lasts until December. These are pulsed, but substantial, food resources that increase in abundance particularly preceding and during winter (Halpin and Bissonette 1988; Cagnacci et al. 2003; DeVault et al. 2003; Sidorovich et al. 2006; Needham et al. 2014; Gomo et al. 2017).
Red fox population densities in the boreal forest vary considerably among years according to the multi-annual population cycles of its main prey, microtine voles (Lindström 1982). This pattern is more profound with increasing latitude and altitude (Englund 1980a; Lindén 1988), and the degree of stability in the red fox population probably relates to both the availability of alternative prey in the low phase of the vole cycle and density-dependent, negative feedback mechanisms from predation on voles (Erlinge et al. 1983). Such negative feedback mechanisms may result from alternative prey sustaining high red fox population densities that, in turn, increase predation pressure on voles in the crash phase of the cycle.
Studies investigating red fox population performance rarely incorporate spatiotemporal variability and are therefore limited to either temporal or spatial inference. Whereas such studies are often valuable in identifying ecological factors and mechanisms in the dimension under study, they often fail to identify the complexity of spatiotemporal heterogeneity which is essential in understanding population and community dynamics (Thorson et al. 2015). We therefore aim to investigate factors potentially involved in the regulation of spatiotemporal variation in red fox abundance and population growth across a gradient of human influence on the landscape. To do this, we contrast potential effects of anthropogenic subsidies and land use to natural productivity gradients on red fox abundance and temporal variability in population growth structure. The bulk of literature on red fox spatial and temporal performance suggests that we can expect red fox population abundance to relate positively to the types of human land use practices that increase scavenging opportunities such as agricultural patches and settlements and, furthermore, that such human land use practices should stabilize the variability in population growth (e.g., Harris 1981; Gosselink et al. 2003; Vuorisalo et al. 2014), because red foxes can easily switch to more abundant prey in such areas if needed. Finally, we discuss potential mechanisms underlying the observed patterns as well as potential consequences of anthropogenic subsidization of generalist predators on the boreal forest ecosystem.
Material and methods
Study area
This study was conducted in Hedmark County, Norway, between 2003 and 2014 (Fig. 1). Hedmark (27,400 km2, of which 13,000 km2 is forest) has marked latitudinal productivity gradients. In the south, there are relatively high productive agricultural lowlands intermixed with large forested areas on low hills. Further north, there are deeper valleys, forest ridges, and mountains. In the north, agriculture and human settlements are confined to strips along the valley bottoms and the landscape is less productive. Agricultural land use categories were dominated by cereal production (64,000 ha) and grass production (41,000 ha) (Bjørlo et al. 2019). Similarly, the continental climate is milder in the south (annual mean temperature 4.76 °C) than in the north (annual mean temperature 1.68 °C) (www.no.climate-data.org) and winter severity (i.e., snow depth and temperature) increases with a latitudinal as well as an altitudinal gradient. Forests are heavily managed for commercial timber production and primarily made up of conifers, dominated by Scots pine (Pinus sylvestris) and Norway spruce (Picea abies), but intermixed with deciduous species such as rowan (Sorbus aucuparia), gray alder (Alnus incana), aspen (Populus tremula), birch (Betula pubescens and B. pendula), and willow (Salix caprea). Municipality-wise, human population densities vary from 0.6 to 86 people km−2, with the lowest densities in the north. Red foxes are common throughout the county and annual hunting bags varied between 2160 and 4170 foxes during the study period (Statistics Norway 2016). In the study area, voles were non-cyclic prior to 2009. Since then, vole populations peaked in 2011 and 2014 (Breisjøberget et al. 2018). Potential predators of the red fox, e.g., Eurasian lynx (Lynx lynx) (Linnell et al. 1998) and golden eagle (Aquila chrysaetos) (Tjernberg 1981) occur throughout the county, whereas the low-density recolonizing gray wolf (Canis lupus) population is concentrated in the east and southeast (Odden et al. 2006; Ordiz et al. 2015; Tovmo et al. 2016). Other species that occur frequently in the study area and that are potential competitors to red fox throughout the year are pine marten (Storch et al. 1990), whereas European badgers (Meles meles) (Kauhala et al. 1998) are hibernating during winter.
Red fox population index
Snow tracking along 613 predefined transects averaging 2.95 km in length (SD = 0.54) was organized by the Hedmark chapter of the Norwegian Association for Hunters and Anglers. Experienced volunteers conducted the fieldwork under favorable conditions (i.e., from 2 to 5 days after snowfall) in late January or early February each year between 2003 and 2014. The number of surveyed transects varied among years (mean = 391.7, SD = 54.9, Table 1). Transect layout was originally designed to monitor Eurasian lynx family groups, and transects were therefore situated below the tree-line and across contour lines (Linnell et al. 2007). The number of crossing red fox tracks, transect length (km), and days since last snowfall were reported for each transect survey. In total, 21,675 fox crossings were observed along 13,746 km of transect during the 12-year survey. Annual population index estimates were calculated as crossing tracks km−1 24 h−1. In total, we obtained a population index estimate for 4700 transect-years. Snow-track surveys, as used here, give credible approximations of animal abundance and may be used to infer population dynamics of species (Thompson et al. 1989; Kurki et al. 1998; Kawaguchi et al. 2015), but it is important to acknowledge that such data hold information about both species density and activity. We further assume that activity patterns across the scale under study is not asymmetric but relatively homogenous. This is a realistic assumption given the spatial extent at which, e.g., red fox home range size varies (Walton et al. 2017). Nevertheless, the transect data ultimately reflect predation pressure by red fox as perceived by prey species across the landscape (Kurki et al. 1998).
Red fox temporal variation
Not all individual transects were complete 12-year time-series because of zero observations or they were not surveyed. The presence of zero observations constitutes a problem when doing time-series analysis because of, e.g., logarithmic transformations and calculation of population growth rates. To amend both zero observations and years not surveyed, individual transects were pooled into 300 transect groups based on proximity by using the spatstat and raster libraries in R (Baddeley et al. 2016; Hijmans 2016). With the pooling procedure, snow-track data and offsets were added whereas covariates were averaged. These transect groups then constituted new individual time-series for investigations of temporal variation in the red fox population. Consequently, after grouping, transect groups had longer sequences of monitoring and fewer zero-observations. For zero counts (not to be confused with not surveyed) still remaining after grouping (n = 97), we added the smallest observable entity possible (Turchin 2003), which in our case was 1 crossing red fox track. Finally, because red fox populations in the southern boreal forest have previously been described as cyclic with a length of 3–4 years, each time-series should cover minimum one potential cycle. We therefore discarded segments of < 4 years of consecutive monitoring and remaining segments were treated as 255 individual, complete time-series with 1781 time-steps of population index estimates (Supplementary material Appendix, Fig. 7).
Habitat data
Transects were related to predictor variables via the transect centroid point. These predictors included elevation, latitude, relative settlement density, and relative agricultural density (Fig. 2). Transect altitude was assessed via a digital terrain model (DTM) from The Norwegian Mapping Authority (The Norwegian Mapping Authority 2017). We expressed latitude as the UTM-north coordinate of the transect centroid point. Land use maps (N250) (The Norwegian Mapping Authority 2017) were the basis for relative settlement and agricultural density estimates. We transformed houses to a point layer that was subsequently used to predict a planar kernel density map from which we extracted kernel values for each transect centroid point. Kernel bandwidth was estimated by Gaussian approximation (Silverman 1986). For relative density of agricultural land, we calculated the geometrical center of agriculture fields and predicted planar kernel density by using agricultural field size as z value. Again, kernel density values were extracted to the transect centroid points.
The only predictor with spatiotemporal variation was number of moose culled per hectare of productive forest. This variable (hereafter “moose culled”) was calculated for each municipality (351 to 3180 km2 large), as this was the smallest scale from which culling data was available. The annual number of moose culled per municipality was retrieved from Statistics Norway (Skara and Steinset 2016) and Hjorteviltregisteret (Miljødirektoratet 2016), whereas the extent of productive forest was derived from digital land use maps (N250) (The Norwegian Mapping Authority 2017). In total, the annual bag of moose varied between 6164 and 8055 animals. Transect group predictors were the means of the transect predictor values prior to grouping. Development of planar kernel density predictions was done in ArcGIS (ESRI INC 2011).
Statistical analyses
We evaluated environmental and anthropogenic relationships to red fox population indices by modeling the population index (tracks km−1 24 h−1) as a dependent variable in a hierarchical Bayesian linear model framework via the rethinking library (McElreath 2016) in R (R Core Team 2016). The red fox population index was formalized as a gamma-Poisson distribution with a log link function. The linear predictor was offset with the log of transect length (km) and log of days since last snowfall, and we fitted municipality as a random effect (see the appendix for details on model components).
To describe and specify temporal variation in the red fox population, we first detrended all time-series with the fitted values from a linear model of the respective time-series. Then, each transect group with > 10 time-steps (n = 58) was checked for cyclicity in the negative feedback processes via the partial rate correlation function (PRCF). The PRCF is quite similar to the partial auto correlation function, but it regresses the instantaneous rate of increase (\( {r}_t=\ln \left(\frac{N_t}{N_{t-1}}\right)\Big) \) on lagged population indices (Berryman and Turchin 2001). We did not detect any cyclic pattern in the negative feedback processes of population regulation by using Bartlett’s criteria of significance. Furthermore, lag 1 from the partial rate correlation function (PRCF[1]) was the dominating order of feedback-delay indicating that direct density dependence was the dominating pattern in growth structure of the red fox population. Henceforth, we used the instantaneous rate of increase (r) as a dependent variable in the model framework investigating spatiotemporal variation in population growth. These models were formalized as a Gaussian distribution with an identity link (see the appendix for details on model components).
We modeled both the population index and density-dependent growth as functions of linear terms. Each model of instantaneous rate of increase included the red fox population index at time t−1 as part of an interaction with each predictor. This allowed us to investigate spatial variation in density dependence. The population index at time t−1, however, was formalized as a second-order polynomial due to its curvilinear relationship to the instantaneous rate of increase. We fitted 20 and 11 a priori models for each dependent variable (population index and r respectively). We specified simple models aiming at obtaining factor-specific information relating red fox population index and density-dependent growth to anthropogenic activity and natural productivity gradients.
Relative settlement and agricultural density, as well as elevation and latitude, were not paired in the same model due to collinearity (r > 0.6). All predictors were scaled to z scores (x − mean/2SD), and thus, intercepts and interactions were simpler to interpret (Gelman and Su 2016). Markov chain Monte Carlo sampling (MCMC) was specified to run at four chains across 6000 iterations and burn-in was set to 4000 iterations. We detected spatial autocorrelation in our dependent variable via the Moran’s I test (Moran 1950). Spatial autocorrelation was handled by modeling varying intercepts as a function of squared distances between the random effects (i.e., between municipalities and transect groups for population index and growth models respectively) (McElreath 2016).
Model evaluation and selection
We visually inspected Markov chains for failure to converge and no convergence issues were detected. All \( \hat{R} \) values were between 1 and 1.01. Relative model parsimony was assessed by WAIC (widely applicable information criterion) (Watanabe 2010) based on posterior likelihoods. We followed an information-theoretic approach when evaluating models, and hence, a combination of model weights (i.e., threshold ∆WAIC < 2) and relative distance to the top model were criteria of inference. Parameter posterior predictions were averaged across models based on model weights, keeping all other fixed effects constant, and reported parameter predictions henceforth incorporate parameter uncertainty.
Results
Temporal variation in the population index of red fox in the study area varied between 2003 and 2014 with more variation earlier than later in the period (Fig. 3).
Evaluation of the population index models showed that the additive effect of settlement density and moose culled performed markedly better than any other model (WAICw = 0.82) (Supplementary material Appendix, Table 2). The positive relationship of settlement density to the red fox population index was quite strong, whilst the weaker, but positive, relationship of moose culled included a slope of zero (Fig. 4). Adding moose culled to settlement density greatly improved the model parsimony as compared to settlement density alone (Supplementary material Appendix, Table 4).
Whereas the mean population index from transect groups was generally concentrated around a few hotspots, absolute values of instantaneous rate of increase were more heterogeneously distributed (Fig. 5). The first-order (i.e., annual) density-dependent structure indicated a relatively strong degree of density dependence (β = − 1.33) (Supplementary material Appendix, Fig. 8). Median instantaneous rate of increase was 0.045 (mean = 0.027, SD = 0.025) and ranged between − 3.62 and 3.68 (Supplementary material Appendix, Fig. 9).
The best performing model of spatially explicit, first-order density-dependent growth was the interaction between the red fox population index and relative density of agricultural land in the landscape (Supplementary material Appendix, Tables 3 and 4). The density-dependent structure in the red fox population was asymmetric throughout the agricultural landscape indicating higher variability in the population index across areas with less agricultural land. Landscapes with more agriculture sustained a slightly higher equilibrium and an increasingly stable population index of red fox, as the equilibrium point (i.e., rt = 0) increased along the gradient from low to high proportions of agricultural fields in the landscape (Fig. 6).
Discussion
In this paper, we show that the spatiotemporal dynamics of red foxes are closely interrelated with human landscape modification and activities. The red fox population index related positively to relative settlement density and the density of moose culled from hunting. Furthermore, we found that negative feedback processes of first-order dynamics (i.e., direct density dependence) dominated the structure of temporal variation in the population index. An increase in the population index of one reduced the instantaneous rate of increase by 1.3, implying relatively strong density dependence. Overall, the equilibrium of the population index (i.e., rt = 0) increased and temporal variability around the equilibrium decreased in areas where agricultural practices (i.e., crop and grass production) was a dominating form of land use.
Positive relationships between fox abundance and human settlements have been observed earlier (e.g., Panek and Bresinski 2002). Human-dominated landscapes are attractive to red foxes primarily via anthropogenic subsidies in the form of increased scavenging opportunities on, e.g., garbage and road kills (Rosalino et al. 2010; Selås et al. 2010). Elevation was nonetheless included in the second best model, but other predictors representing climate and productivity gradients (e.g., latitude) were generally not ranked high. This implies that potential effects of settlements differ from those of landscape productivity and climate and, furthermore, that strong relationships between red fox indices and anthropogenic influence mask potential effects of natural productivity and climate gradients.
Although there was a positive relationship between moose culled and the red fox index, the relationship was weak. This is surprising given the multitude of forage and diet studies identifying entrails, carrion, and carcass remains as important items in red fox diets (Halpin and Bissonette 1988; Jędrzejewski and Jędrzejewska 1992; Cagnacci et al. 2003; DeVault et al. 2003; Sidorovich et al. 2006; Panzacchi et al. 2008b; Needham et al. 2014). The inclusion of the moose culled term, however, greatly improved the relative model performance over settlements alone and moose culled thus explained a large proportion of the variance in the red fox index not accounted for by settlements. This specific pattern may be caused by the fact that offal from hunting is mainly available in a temporally narrow pulse during late autumn (Gomo et al. 2017). Additionally, as highlighted in several dietary studies, there is temporal variability in the importance of large herbivore remnants and carcasses. In Poland, deer carcasses from kills from large carnivores or other winter mortality were important buffer foods when voles were scarce (Jędrzejewski and Jędrzejewska 1992), whereas the importance of carcasses from semi-domesticated reindeer (Rangifer tarandus tarandus) was inversely related to lemming (Lemmus lemmus) abundance in northern Norway (Killengreen et al. 2011). As such, the degree of scavenging for carcasses probably interacts with varying accessibility to voles, either via their abundance or, e.g., snow cover (Willebrand et al. 2017). The impact of such alternative sources of foods to the red fox needs to be better understood, but they are probably improving body condition preceding winter and thus winter survival (Needham et al. 2014).
The observed range in the estimated instantaneous rate of increase was higher than in other reports (e.g., Hone 1999), and we propose two explanations for this pattern. Firstly, dispersal of highly mobile juvenile red foxes (Englund 1980b) as well as considerable flexibility in space use within home ranges (i.e., LoCoH 90 vs. MCP 100) (Walton et al. 2017) are innate components of the monitored population, and secondly, the fluctuating nature of the boreal forest ecosystem should yield high variation in birth and death rates (Lindström 1982). In systems with fluctuating resources (e.g., vole cycles in the boreal forest), these two mechanisms are entwined because red foxes may show an aggregative and/or a demographic responses to spatiotemporal variability in resource distribution (Henden et al. 2010; McKinnon et al. 2013). It is worth noting that we cannot separate the two responses (i.e., aggregative and demographic) because changes in track frequencies may be due to changes in both red fox density and activity.
Density dependence across the agricultural continuum was asymmetric. As the red fox index increased, the strength of density dependence progressively relaxed with increasing relative coverage of agricultural land. This suggests that the variability in red fox is inversely related to the presence of agriculture because variable population dynamics is associated with strong density-dependent growth (Hanski 1990). Both the density and distribution of resources as well as social regulation may be underlying factors explaining this pattern. Previously, variation in space use across a large-scale productivity gradient have been observed (Walton et al. 2017), but the degree of heterogeneity in space use at smaller scales is less known, although probably similar (Kurki et al. 1998). Social regulation, due to territoriality, is one potential mechanism that may decrease with increasing territory size (Goszczyński 2002), which again is inversely related to red fox density (Trewhella et al. 1988).
In Scandinavia, predation pressure exerted on alternative prey by generalist predators (e.g., red foxes) varies in phase with the vole cycle, and this relationship is termed the alternative prey hypothesis (Hagen 1952; Angelstam et al. 1984; Panzacchi et al. 2008a). The fundamental principal is that large annual variation in the main prey, typically voles, generates predator-mediated fluctuations in alternative prey species, e.g., grouse. Due to prey switching, predation pressure on alternative prey increase during vole population declines. As vole populations increase, alternative prey is again relieved of predation pressure due to lower red fox abundance and prey switching. Provisioning red foxes with alternative foods may buffer fox population declines following the crash in the vole cycle and this may well be a mechanism causing the observed asymmetry in population regulation along the agricultural continuum. Elevated baseline populations of predators in the low phase of the prey cycle may subsequently limit cyclic amplitude in the prey population (Krebs et al. 2014). Moreover, negative feedback processes from predation in a cyclic system may also dampen prey fluctuations (Erlinge et al. 1983, 1991). Ultimately, trophic cascades driven by increased scavenger abundance, survival, and fecundity are expected implications of providing anthropogenic food subsidies (Newsome et al. 2014). Such effects on other trophic levels may, for example, involve stabilization of prey species by preventing sequential years of population growth (Hansson 1988).
Several factors may interact with habitat quality and successively modulate effects of habitat on red fox density and population dynamics in the landscape (Gorini et al. 2012). In spite of the potential for complex regulatory mechanisms, single-factor explanations governing red fox distribution and performance along the forest-farmland continuum is of particular interest to conservation (e.g., Tryjanowski et al. 2011) and determinants of density-dependent structure needs to be pursued in future research in general (Sibly and Hone 2002). For conservational purposes, it is important to distinguish between factors increasing the landscape’s overall carrying capacity from factors that stabilize red fox population growth. Such factors are inherently different in the potential impact on alternative and incidental prey in a fluctuating environment. Reducing anthropogenic subsidization, particularly preceding and during winter may prove a successful conservation action for farmland or other species currently depressed by red fox predation.
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Acknowledgments
We are grateful to the Hedmark Chapter of The Norwegian Association for Hunters and Anglers and to all the volunteers collecting data.
Funding
Open Access funding provided by Inland Norway University Of Applied Sciences. The data collection was funded by the Norwegian Environment Agency. The analysis was funded by multiple sources, with JDCL and MP funded by the Norwegian Environment Agency and the Research Council of Norway (grants 183176, 212919, and 251112).
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Appendix
Appendix
Model components
We modeled red fox abundance likelihoods with gamma-Poisson (i.e., negative binomial) error distributions, whilst we modeled density-dependent growth likelihoods with Gaussian (i.e., normal) error distributions.
Abundance models:
Growth models:
We fitted municipality and year as group-level effects for the linear predictors for abundance and growth models respectively. Offset for abundance models was the log of transect length (km) and log of days since last snowfall. For abundance models, spatial autocorrelation was accounted for at the municipality level, whilst in growth models, spatial autocorrelation was accounted for between transect groups.
Abundance models:
Growth models:
The prior distribution for the spatial autocorrelation component was formalized by a Gaussian process distribution (i.e., multivariate normal) of a K-dimensional (22 dimensions for municipalities and 255 dimensions for transect groups) matrix of zero means in order for the distribution to express the deviance from the expected mean intercept α in the linear predictor.
The covariance matrix K describing covariance between the ith and jth group-level factor was defined as the product of the maximum covariance between any two group levels η2, the exponential covariance decline rate ρ2 and squared distance D between the ith and jth group-level factor. The last term, δijσ2 (i.e., jitter term), provides additional covariance for multiple observations from the same group-level factors and was fixed to 0.01.
Prior distributions of hyper- and model parameters were weakly informed (i.e., flat priors). Model parameters for fixed effects β were normally distributed and set to μ = 0 and σ = 10 for all beta coefficient priors. The grand mean intercept parameter α was set to μ = 0 and σ = 1. Scale parameter C was formalized as a half-Cauchy distribution with location of zero and scale of 2 (i.e., relatively wide) whilst standard deviation σ, maximum covariance η2, and covariance decline rate ρ2 were half-cauchy distributions with location of zero and scale of 1.
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Jahren, T., Odden, M., Linnell, J.D.C. et al. The impact of human land use and landscape productivity on population dynamics of red fox in southeastern Norway. Mamm Res 65, 503–516 (2020). https://doi.org/10.1007/s13364-020-00494-y
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DOI: https://doi.org/10.1007/s13364-020-00494-y