Diego Oyarzún

Springer Nature publications

• Article

  Accurate prediction of gene deletion phenotypes with Flux Cone Learning

  • Charlotte Merzbacher
  • Oisin Mac Aodha
  • Diego A. Oyarzún

  in Nature Communications

  26 September 2025 Open Access

  
• Article

  Integration of graph neural networks and genome-scale metabolic models for predicting gene essentiality

  • Ramin Hasibi
  • Tom Michoel
  • Diego A. Oyarzún

  in npj Systems Biology and Applications

  6 March 2024 Open Access

  
• Protocol

  A Machine Learning Approach for Predicting Essentiality of Metabolic Genes

  • Lilli J. Freischem
  • Diego A. Oyarzún

  in Synthetic Biology

  1 January 2024

  
• Article

  Discovery of senolytics using machine learning

  • Vanessa Smer-Barreto
  • Andrea Quintanilla
  • Diego A. Oyarzún

  in Nature Communications

  10 June 2023 Open Access

  
• Article

  Publisher Correction: Accuracy and data efficiency in deep learning models of protein expression

  • Evangelos-Marios Nikolados
  • Arin Wongprommoon
  • Diego A. Oyarzún

  in Nature Communications

  18 May 2023 Open Access
• Article

  Accuracy and data efficiency in deep learning models of protein expression

  • Evangelos-Marios Nikolados
  • Arin Wongprommoon
  • Diego A. Oyarzún

  in Nature Communications

  15 December 2022 Open Access

  
• Article

  Integrated methylome and phenome study of the circulating proteome reveals markers pertinent to brain health

  • Danni A. Gadd
  • Robert F. Hillary
  • Riccardo E. Marioni

  in Nature Communications

  9 August 2022 Open Access

  
• Protocol

  Prediction of Cellular Burden with Host–Circuit Models

  • Evangelos-Marios Nikolados
  • Andrea Y. Weiße
  • Diego A. Oyarzún

  in Synthetic Gene Circuits

  1 January 2021

  
• Article

  Pathways to cellular supremacy in biocomputing

  • Lewis Grozinger
  • Martyn Amos
  • Angel Goñi-Moreno

  in Nature Communications

  20 November 2019 Open Access

  
• Article

  Stochastic modelling reveals mechanisms of metabolic heterogeneity

  • Mona K. Tonn
  • Philipp Thomas
  • Diego A. Oyarzún

  in Communications Biology

  21 March 2019 Open Access

  
• Article

  Flux-dependent graphs for metabolic networks

  • Mariano Beguerisse-Díaz
  • Gabriel Bosque
  • Mauricio Barahona

  in npj Systems Biology and Applications

  14 August 2018 Open Access

  
• Article

  The power of synthetic biology for bioproduction, remediation and pollution control

  • Víctor de Lorenzo
  • Kristala LJ Prather
  • Sang Yup Lee

  in The EMBO Reports

  26 March 2018 Open Access

  
• Article

  Dynamic metabolic control: towards precision engineering of metabolism

  • Di Liu
  • Ahmad A. Mannan
  • Fuzhong Zhang

  in Journal of Industrial Microbiology & Biotechnology

  29 January 2018

  
• Chapter

  Model Reduction of Genetic-Metabolic Networks via Time Scale Separation

  • Juan Kuntz
  • Diego Oyarzún
  • Guy-Bart Stan

  in A Systems Theoretic Approach to Systems and Synthetic Biology I: Models and System Characterizations

  1 January 2014

  
• Article

  Predicting the F(ab)-mediated effect of monoclonal antibodies in vivo by combining cell-level kinetic and pharmacokinetic modelling

  • Ben-Fillippo Krippendorff
  • Diego A. Oyarzún
  • Wilhelm Huisinga

  in Journal of Pharmacokinetics and Pharmacodynamics

  8 March 2012 Open Access

  
• Article

  Sequential Activation of Metabolic Pathways: a Dynamic Optimization Approach

  • Diego A. Oyarzún
  • Brian P. Ingalls
  • Dimitrios Kalamatianos

  in Bulletin of Mathematical Biology

  2 May 2009 Open Access