Abstract
Almost all non-small cell lung cancer (NSCLC) patients initially responding to EGFR tyrosine kinase inhibitors (TKIs) develop acquired resistance. Since KCa3.1 channels, expressed in mitochondria and plasma membrane, regulate similar behavioral traits of NSCLC cells as EGFR, we hypothesized that their blockade contributes to overcoming EGFR-TKI resistance. Meta-analysis of microarray data revealed that KCa3.1 channel expression in erlotinib-resistant NSCLC cells correlates with that of genes of integrin and apoptosis pathways. Using erlotinib-sensitive and –resistant NSCLC cells we monitored the role of mitochondrial KCa3.1 channels in integrin signaling by studying cell-matrix adhesion with single-cell force spectroscopy. Apoptosis was quantified with fluorescence-based assays. The function of mitochondrial KCa3.1 channels in these processes was assessed by measuring the mitochondrial membrane potential and by quantifying ROS production. Functional assays were supplemented by biochemical analyses. We show that KCa3.1 channel inhibition with senicapoc in erlotinib-resistant NSCLC cells increases cell adhesion by increasing β1-integrin expression, that in turn depends on mitochondrial ROS release. Increased adhesion impairs migration of NSCLC cells in a 3D matrix. At the same time, the senicapoc-dependent ROS production induces cytochrome C release and triggers apoptosis of erlotinib-resistant NSCLC cells. Thus, KCa3.1 channel blockade overcomes EGFR-TKI resistance by inhibiting NSCLC motility and inducing apoptosis.
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Introduction
Lung cancer is the second most common type of cancer and a leading cause of cancer-related death with non-small cell lung cancer (NSCLC) being the predominant subtype (85%) [1, 2]. For this subtype the patients’ 5-year survival rate reaches only 5% [3]. Treatment options for the advanced stages vary from external radiation therapy to combination chemotherapy and targeted therapy, accomplished according to the respective molecular classification.
The EGF receptor (EGFR) is one of the most important proto-oncogenes in this context [4]. EGFR is overexpressed in more than 60% of all NSCLCs and regulates several cellular processes relevant for tumor progression [5]. NSCLC frequently harbors activating EGFR mutations, usually located between exon 18 and 21, leading to its constitutive activation [6]. Therefore, the EGFR tyrosine kinase inhibitors (EGFR-TKI) such as erlotinib became important therapeutics that are commonly utilized in patients with metastatic NSCLC [7]. Unfortunately, while most EGFR-mutant NSCLCs initially respond to EGFR-TKIs, they ultimately become resistant resulting in tumor relapse [8]. The most common mechanism causing EGFR-TKI resistance is the development of secondary mutations, such as the T790M mutation. It accounts for 50–60% of cases with acquired resistance to first generation EGFR-TKIs (e.g. gefitinib or erlotinib) [9, 10]. The development of new generation EGFR-TKIs, such as osimertinib, partially solved the problem. However, also in this case acquired resistance is recurrent during patient treatment [11].
Thus, there is still an unmet need for improved therapeutic concepts for the treatment of NSCLC. A promising novel approach is targeting ion channels in cancer. Several studies showed that the combination of first-line treatments with ion channel modulators affects “conventional” cancer treatment by lowering doses of the chemotherapeutic drugs thereby reducing undesirable side effects [12]. In this context, KCa3.1 is a particularly attractive target. KCa3.1 has multiple roles in NSCLC [13]. Its expression has prognostic value [14]. Moreover, it contributes to disease progression. In vitro and in vivo experiments, previously performed by our group, showed that KCa3.1 silencing or inhibition with the KCa3.1 blockers senicapoc or TRAM-34 impair migration, invasion, proliferation and tumor growth [15, 16]. Moreover, the combination with the KCa3.1 channel blocker senicapoc increases the sensitivity to erlotinib, especially under hypoxic conditions [17]. KCa3.1 is also expressed in mitochondria of NSCLC cells where it regulates the mitochondrial membrane potential and thereby the mitochondrial production of superoxide [18]. Here, we unraveled mechanisms by which KCa3.1 channels located in the inner membrane of mitochondria contribute to EGFR-TKI resistance of NSCLC cells.
Results
Altered KCa3.1 channel expression is linked to dysregulation of several pathways
Performing a Spearman correlation analysis within the NSCLC cells datasets GSE38310, GSE38404 and GSE3125, we found that the expression of CASP3 (caspase 3) and MAP3K9 (mitogen-activated protein kinase 9) inversely correlated with that of KCNN4. MAP3K9 is recognized as part of the JNK pathway and its function is mainly related to apoptosis by inducing the caspase cascade [19]. As shown in Fig. 1, these two genes, MAP3K9 and CASP3, are expressed at higher levels in erlotinib-resistant than erlotinib-sensitive cells (394.6 ± 39.1 a.u. vs 137.4 ± 10.0 a.u. and 497.5 ± 18.3 a.u. vs 310.6 ± 19.1 a.u., respectively). We showed earlier that KCa3.1 expression is lower in erlotinib-resistant cells [17]. COL13A1 (collagen type XIII α1 chain; involved in the integrin pathway and linked to the activation of β1-integrin [20]) expression levels are variable in the three data sets. While there is a correlation between COL13A1 and KCNN4 expression in the individual data sets, the large scatter of expression values dissipates this correlation when combining all three data sets. Both the integrin and apoptosis pathways are among the top 10 of the most represented pathways related to the 433 differentially expressed genes (DEGs) between erlotinib-resistant and -sensitive cells. Of the 433 DEGs, 7 are part of the integrin pathway and 11 of the apoptosis pathway.
Caspase 3 activity increases after senicapoc treatment of NSCLC cells
Based on the results of the bioinformatic analyses we studied the involvement of KCa3.1 channels in apoptosis of erlotinib-sensitive and -resistant NSCLC cells using DEVD-FMK conjugated to sulfo-rhodamine as an in-situ marker. Doxorubicin was used as positive control [21]. Figure 2A displays the fluorescence of the apoptosis marker in the NSCLC cells. As expected sensitive A549 cells show a strong activation of caspase 3 after erlotinib treatment (910.0 ± 34.2 a.u. vs 35.0 ± 2.10 a.u. under control conditions). In partially erlotinib-resistant A549res cells, erlotinib treatment induces a much smaller increase of caspase 3 activation (83.7 ± 5.0 a.u. vs 27.1 ± 2.0 a.u.). In the fully resistant H1975 cells erlotinib has no effect on caspase 3 activation (24.7 ± 1.0 a.u. control vs 27.9 ± 1.1 a.u. erlotinib; Fig. 2B).
In all three cell lines senicapoc alone increases caspase 3 activation (222.2 ± 6.4 a.u. in A549; 198.7 ± 6.5a.u. in A549res; 96.3 ± 3.1 a.u. in H1975). The double treatment showed not only a higher caspase 3 activation compared to control in A549 cells (829.6 ± 21.1 a.u.) but also a noticeably higher caspase 3 activation compared to single treatments of A549res cells with erlotinib or senicapoc (A549res: 291.3 ± 7.9 a.u.). This also applies to the fully resistant H1975 cells. Caspase 3 activation is twice as high following the double treatment than with senicapoc alone (193.3 ± 5.9 a.u.). The following experiments are aimed at elucidating mechanisms by which KCa3.1 channel inhibition apparently overcomes erlotinib resistance.
Cytochrome C is released into the cytosol of senicapoc-treated NSCLC cells
Cytochrome C is one of the main activators of the intrinsic apoptosis pathway [22]. We therefore tested whether KCa3.1 inhibition induces cytochrome C release into the cytosol after 6 h treatment. Cytochrome C was normalized to vinculin and ATP5a as housekeeping proteins for the cytoplasmic and the mitochondrial fractions, respectively (see Fig. 2C and Supplementary Fig. 1A). These experiments are summarized in Fig. 2D. Cytochrome C release into the cytoplasm rises by ~60%, ~30% and ~100% after senicapoc treatment of A549, A549res and H1975 cells, respectively. This points to a potential role of mitochondrial KCa3.1 channel activity in apoptosis induction.
KCa3.1 is expressed in mitochondria of surgical tumor samples from NSCLC patients
We recently showed the expression of KCa3.1 channels in mitochondria of the NSCLC cell lines A549, H1299, and H1975 [18]. Here we applied Western blotting to verify that KCa3.1 is also expressed in the mitochondria of primary NSCLC cells (adenocarcinoma) derived from surgical patient samples. We used BAK and α-tubulin as loading controls for mitochondrial and whole cell lysates, respectively. Figure 2E shows that the channel is present in the mitochondrial fraction (“m1”) of the patient samples that also contained BAK. In contrast, cytosolic α-tubulin is almost absent in this fraction.
KCa3.1 channel-dependent dynamics of the mitochondrial membrane potential in erlotinib-sensitive and –resistant NSCLC cell lines
After showing the mitochondrial expression of KCa3.1 channels in NSCLC cells, we tested their impact on the membrane potential of the inner mitochondrial membrane by using the cationic fluorescent dye Tetramethylrhodamine Methyl Ester (TMRM) (Fig. 3A). These experiments extend our previous observations [18] by also investigating the effect of erlotinib and its combination with senicapoc (Fig. 3). In contrast to senicapoc, which we had shown to increase TMRM fluorescence by 49.3 ± 11.2% [18], erlotinib elicits a TMRM fluorescence intensity decrease by 33.1 ± 4.3% within 10 min corresponding to a depolarization of the mitochondrial membrane potential of A549 cells. The double treatment with senicapoc and erlotinib induces an even more pronounced depolarization: -67.7 ± 3.5% of TMRM fluorescence intensity within 5 min (Fig. 3B).
As expected erlotinib does not change the mitochondrial membrane potential of A549res and H1975 cells, while senicapoc induces an increase of the TMRM fluorescence (corresponding to the expected hyperpolarization) by 34.7 ± 6.6% within 10 min in A549res cells and 22.2 ± 0.8% in H1975 cells (Fig. 3C, D). Similarly, the double treatment with senicapoc and erlotinib results initially in increased fluorescence within 10 min: +27.6 ± 9.7% in A549res cells and +22.2 ± 0.8% in H1975 cells. Notably, the hyperpolarization is only transient in erlotinib-resistant cells. It is followed by a depolarization. TMRM fluorescence drops by 28.7% in A549res and by 13.5% in H1975 at t = 25 min.
Senicapoc in combination with erlotinib induces ROS release in erlotinib-resistant NSCLC cells
To check whether KCa3.1-mediated changes of the mitochondrial membrane potential are followed by a ROS release, we used the fluorescent mitochondrial superoxide indicator MitoSOX (Fig. 4). As shown previously ROS release rises in senicapoc-treated A549 cells after ~40 min (fluorescence increase compared to baseline values: control 22.9 ± 4.3% vs senicapoc 88.2 ± 25.4%) as shown previously (Bulk 2022). Following double treatment with erlotinib and senicapoc this occurs after 30 min (18.6 ± 4.9% control vs 102.3 ± 41.3% senicapoc and erlotinib; Fig. 4B).
A549res and H1975 cells show a similar behavior when treated with senicapoc or with senicapoc and erlotinib in combination (Fig. 4C, D). By the end of the measurements, senicapoc or the combination have caused marked increases of the MitoSOX fluorescence intensities (A549res cells: control: 19. ± 5.8%, senicapoc: 103.1 ± 22.5%; double treatment: 123.0 ± 30.5%; H1975 cells: control: 47.3 ± 3.6%, senicapoc: 113.1 ± 20.4%; double treatment: 126.3 ± 9.1%). Treating A549res or H1975 cells with erlotinib alone does not lead to ROS production (A549res cells 33.3 ± 7.3%; H1975 cells: 46.7 ± 10.3%).
Interestingly, H1975 have a different initial ROS levels (Fig. 4E) (234.4 ± 48.0 a.u.) than A549 (136.3 ± 28.6 a.u.) and A549res cells (139.0 ± 39.7 a.u.). This is even more pronounced after senicapoc treatment, when comparing the raw values at t = 56 min (end of the experiment): ROS levels reach 445.0 ± 147.1 a.u. in H1975, 281.9 ± 92.2 a.u. in A549 and 217.6 ± 56.0 a.u. in A549res cells.
KCa3.1 channel inhibition reduces oxygen consumption and mitochondrial ATP production in NSCLC cells
Since the mitochondrial membrane potential provides the driving force for the respiratory chain, we next assessed the effect of KCa3.1 channel inhibition on OCR and ATP production. To this end, we performed a Seahorse XF ATP production assay. As shown in Fig. 4F (and Supplementary 1B &1C), senicapoc leads to a marked drop of the OCR in all three cell lines. OCR (basal levels: A549: 49.8 ± 4.2 pmol/min; A549res: 50.8 ± 3.9 pmol/min; H1975: 63.2 ± 7.2 pmol/min) drops by 30.9%, 37.6% and 31.5%, respectively, after 5–10 min following addition of senicapoc. The senicapoc-induced decrease in the OCR is accompained by a decrease of the mitochondrial ATP production in all the three cell lines. Mitochondrial ATP production decreases by ~40%, ~30% and ~37% after senicapoc treatment of A549, A549res and H1975 cells, respectively (Fig. 4G).
Collectively, our data thus far show that KCa3.1 channels overcome erlotinib resistance of NSCLC cells by their marked impact on the function of mitochondria.
KCa3.1 blockade increases NSCLC cell adhesion to and inhibits migration in an ECM-like matrix
The bioinformatic analysis revealed a correlation between the expression of KCa3.1 and genes involved in the integrin pathway. Therefore, we explored the impact of KCa3.1 modulation on integrin signaling in erlotinib-sensitive and -resistant NSCLC cells. This was mainly done by quantifying the maximal adhesion force of NSCLC cells to an ECM-like matrix with single-cell force spectroscopy. In Fig. 5A, B we show measurements with A549 cells: Under control conditions (1:1000 DMSO) the cells have a maximal adhesion force of 1.31 ± 0.06 nN. Adhesion force strongly increases to 1.71 ± 0.06 nN when the KCa3.1 channel is inhibited with senicapoc. When cells are treated with erlotinib cell adhesion to the matrix decreases to 0.55 ± 0.02 nN. The double treatment with senicapoc and erlotinib restores the maximal adhesion force to control levels (1.28 ± 0.06 nN).
As expected erlotinib has no impact on the adhesion of A549res and H1975 cells to the ECM matrix (A549res cells: control: 1.11 ± 0.04 nN, erlotinib: 1.06 ± 0.06 nN; H1975 cells: control: 1.19 ± 0.05 nN, erlotinib: 1.41 ± 0.06 nN; Fig. 5B). Senicapoc leads to an increase of the adhesion force (A549res cells: 1.47 ± 0.08 nN; H1975 cells: 1.72 ± 0.07 nN). This increase becomes even more evident in H1975 cells treated with senicapoc and erlotinib, where adhesion force markedly rise (2.24 ± 0.11 nN). In A549res cells the double treatment induces a higher adhesion force, comparable to the one observed with senicapoc alone (1.47 ± 0.08 nN).
We next tested whether the KCa3.1-dependent regulation of cell-matrix adhesion of (erlotinib-resistant) NSCLC cells modulates cell migration in a three-dimensional ECM-like collagen matrix. Figure 5C illustrates the trajectories of the A549 cells that are normalized to common starting points. Figure 5D, E summarize the results of the migration experiments. Under control conditions (1:1000 DMSO) A549 cells have a migration speed of 0.36 ± 0.06 μm/min and the translocation amounts to 72.3 ± 9.6 μm. Inhibiting KCa3.1 channels with senicapoc reduces their translocation (42.3 ± 7.0 μm), but does not affect the migration speed (0.32 ± 0.03 μm/min). Erlotinib or the combination of erlotinib and senicapoc drastically decrease both parameters (migration speed: 0.09 ± 0.01 μm/s and 0.08 ± 0.06 μm/s, respectively, translocation: 9.0 ± 1.2 μm and 11.7 ± 1.3 μm, respectively).
In A549res cells, senicapoc reduces the translocation by ~45% (50.1 ± 6.7 μm vs 27.8 ± 3.4 μm), while the migration speed remains unchanged (0.32 ± 0.03 μm/min vs 0.35 ± 0.03 μm/min). H1975 cells respond in a similar way (translocation: 64.1 ± 9.2 μm vs 30.2 ± 3.5 μm; speed: 0.22 ± 0.02 μm/min vs 0.23 ± 0.03 μm/min).
Since A549res are partially erlotinib-resistant, the effect of erlotinib is still present but smaller than in A549 cells. Translocation and migration speed decrease to 24.8 ± 3.4 μm and 0.16 ± 0.02 μm/min, respectively. Erlotinib does not affect translocation and migration speed of H1975 cells (translocation: 64.1 ± 9.2 μm vs 64.7 ± 7.0 μm; migration speed: 0.21 ± 0.02 μm/min vs 0.26 ± 0.02 μm/min).
In the combined presence of senicapoc and erlotinib the translocation of the A549res cells is reduced even more to 10.9 ± 1.5 μm. The same effect on translocation is visible in H1975 cells (18.8 ± 2.5 μm). The migration speed of H1975 cells is not affected by the double treatment (0.18 ± 0.01 μm/min). The differential effect of senicapoc or its combination with erlotinib on translocation and migration speed can be interpreted as “running on the spot”. This effect is particularly important in erlotinib-resistant cells. Thus, cell-matrix adhesion and thereby cell migration are further behavioral traits of NSCLC cells where erlotinib-resistance can be overcome by KCa3.1 channel inhibition. The following experiments aim at determining the potential mechanism underlying the altered migratory behavior.
Senicapoc and its combination with erlotinib increase adhesion to the ECM by elevating β1-integrin expression in a ROS-dependent way
We tested whether β1-integrin expression is involved in the KCa3.1 channel-dependent increase of adhesion between NSCLC cells and the ECM. Western blotting indicated that a 24 h treatment of A549, A549res and H1975 cells with senicapoc alone increases the expression of β1-integrin (Fig. 6A, B; Supplementary Fig. 2A). The same applies for the double treatment of the two resistant cell lines.
The functional relevance of this observation was tested with single cell force spectroscopy experiments. NSCLC cells were preincubated with a blocking β1-integrin antibody or with an IgG control antibody. As shown in Fig. 6C, the senicapoc-induced increase of the adhesion force is prevented by the β1-integrin blocking antibody, but not by an IgG control antibody. The respective values are: A549 cells: 1.31 ± 0.06 nN (control), 0.96 ± 0.03 nN (β1-integrin blocking antibody plus senicapoc), 1.63 ± 0.04 nN (IgG control antibody plus senicapoc). A549res cells: 1.11 ± 0.04 nN (control), 0.87 ± 0.03 nN (β1-integrin blocking antibody plus senicapoc), 1.70 ± 0.06 nN (IgG control antibody plus senicapoc). The same applies for H1975 cells, where the adhesion in the presence of the β1-integrin blocking antibody amounts to 0.80 ± 0.04 nN (control value 1.19 ± 0.04 nN). These results suggest that the KCa3.1 channel-dependent increase of cell-matrix adhesion of NSCLC cells and their migratory phenotype are mediated at least in part by increased β1-integrin expression.
Finally, we tested whether KCa3.1 channels located in the plasma membrane or in the inner membrane of mitochondria are required for regulating cell-matrix adhesion and β1-integrin expression. NSCLC cells were treated with the small peptide toxin maurotoxin (mtx) that cannot pass the plasma membrane and therefore does not inhibit mitochondrial KCa3.1 channels. Alternatively, we used the ROS scavenger mitoTEMPO in combination with senicapoc. Figure 6D & E show that maurotoxin does not change the maximal adhesion force in A549 cells (1.31 ± 0.06 nN (mtx) vs 1.16 ± 0.04 nN (ctr)). Moreover, the senicapoc-induced increased adhesion is abolished when A549 cells are treated with the ROS scavenger mitoTEMPO in combination with senicapoc (1.33 ± 0.05 nN).
We obtained very similar results with the two erlotinib-resistant cell lines: Maurotoxin does not increase the maximal adhesion force in A549res cells (1.26 ± 0.06 nN (mtx) vs 1.11 ± 0.04 nN (ctr)) and in H1975 cells (1.24 ± 0.04 nN (mtx) vs 1.19 ± 0.05 nN (ctrl)) (Fig. 6E). Moreover, mitoTEMPO prevents the senicapoc-induced rise of the maximal adhesion force in A549res cells (1.71 ± 0.04 nN) (senicapoc) vs 1.10 ± 0.05 nN (senicapoc + mitoTEMPO) and in H1975 cells (1.58 ± 0.09 nN (senicapoc) vs 1.19 ± 0.06 nN (senicapoc + mitoTEMPO)).
Adhesion force measurements were complemented by determining the expression of β1-integrin under the same experimental conditions. Figure 6F & G (see also Supplementary 2B) reveal that the senicapoc-dependent increase of β1-integrin expression is prevented in the presence of mitoTEMPO and is not present when cells are treated with maurotoxin. These results indicate that the higher adhesion evoked by senicapoc treatment is mainly due to its inhibitory function on mitoKCa3.1 channels.
Senicapoc-dependent β1-integrin expression is regulated by activation of the JNK pathway
Finally, we tested whether the JNK pathway is an intermediary between senicapoc-induced mitochondrial ROS release and increase of β1-integrin expression since the bioinformatic analysis revealed a lower expression of one of the JNK pathway proteins, JUN (Jun proto-oncogene, AP-1 transcription factor subunit; Fig. 7A). In all the three cell lines, the double treatment (senicapoc plus erlotinib) causes a JNK and Jun activation as revealed by a higher phosphorylation levels (Fig. 7B-D & Supplementary 2C).
Therefore, we performed another series of Western blot experiments to determine whether blocking JNK activation with the JNK inhibitor SP600125 (MedChemExpress) [23] prevents the β1-integrin up-regulation caused by senicapoc. Figure 7E–F reveal that this is indeed the case. In A549 and H1975 cells the senicapoc-dependent β1-integrin increase is prevented in the presence of SP600125.
Discussion
This study aimed to address the role of KCa3.1 channels in EGFR-TKI resistance in NSCLC. Growth factor receptors like EGFR and ion channels often functionally cooperate in cancer cells so that anti-cancer effects of TKIs can be potentiated by co-treatment with ion channel modulators [24, 25]. Indeed, frequently therapy resistance is related to overexpression or reduction of K+ channel expression [26]. Here we tested whether the efficacy of the EGFR-TKI erlotinib can be enhanced and resistance of NSCLC cells to this drug be overcome by combining it with the highly specific KCa3.1 inhibitor senicapoc. The key results obtained are: (1) KCa3.1 expression is reduced in erlotinib-resistant cells and this is linked to dysregulation of the integrin and apoptosis pathway in resistant cells. (2) Senicapoc co-treatment with erlotinib contributes to overcoming erlotinib-resistance by inducing apoptosis and impairing cancer cell migration via up-regulation of β1-integrin expression. (3) Inhibition of mitochondrial KCa3.1 channels is the central mechanism for overcoming erlotinib resistance, by alterating mitochondrial membrane potential dynamics and ROS release.
The lower expression of KCa3.1 channels in erlotinib-resistant cells can be explained by a lower expression of JUN since it is part of the AP-1 complex that regulates KCa3.1 expression [27, 28]. Moreover, c-Jun increases expression and regulates function of the DNA methyltransferase-1 (DNMT1) in cancer cells [29, 30]. Hence, it could also decrease the expression of KCa3.1 channels by enhancing DNA methylation of its promoter [15]. In our case the direct regulation of Jun in KCa3.1 expression results to be the main explanation for a reduction of the channel in erlotinib-resistant cells.
Following the bioinformatic analysis, our functional assays showed that the sensitivity to erlotinib was recovered in A549res and H1975 cells when they were treated in combination with senicapoc. Double treatment induces a marked increase of apoptosis, and at the same time translocation of erlotinib-resistant cells is reduced by 50–60%. The common denominator of both effects is the inhibition of mitochondrial KCa3.1 channels in erlotinib-resistant NSCLC cells. Here we showed for the first time that KCa3.1 channels are also expressed in mitochondria of tissue samples from NSCLC patients. As expected erlotinib does not affect the mitochondrial homeostasis in erlotinib-resistant NSCLC cells. However, the combined application of erlotinib and senicapoc elicits a complex dynamics of the mitochondrial membrane potential. It induces a transient hyperpolarization, which is followed by a depolarization (- occurring after ~20 min of treatment -) and then leads to increased ROS release after ~30 min of treatment. Enhanced mitochondrial ROS production, not apparent in case of erlotinib treatment of A549res and H1975, is therefore an important event to overcome erlotinib resistance upon KCa3.1 channel inhibition.
A sustained ROS generation can trigger the mPTP opening which leads to a depolarization of the mitochondrial membrane potential and a higher release of pro-apoptotic factors from mitochondria [31,32,33]. Notably, there is a close correlation between ROS production in A549, A549res and H1975 cells after senicapoc treatment (106%, 56% and 130%, respectively) and the increase in the release of pro-apoptotic cytochrome c into the cytoplasm (60%, 30% and 100%, respectively).
ROS production, which includes the activation of the JNK pathway as an intermediary step, is also responsible for an up-regulation of β1-integrin expression. AFM-based single cell force spectroscopy experiments revealed that stimulating the expression of β1-integrins which is particularly important in erlotinib-resistant cells. In these cells the double treatment with senicapoc and erlotinib causes a ROS-dependent up-regulation of the β1-integrin expression and thereby increases adhesion of the cancer cells to the ECM. The movement of cancer cells within a 3D matrix displays a biphasic dependence on adhesion when the environmental properties such as stiffness of the matrix are constant [29]. Hence, increased adhesion results in reduced migration. Acquired resistance also implies a higher invasiveness [34]. Therefore, the combination of erlotinib with senicapoc will decrease the invasiveness of the NSCLC resistant cells and reduce the spreading of the cancer because it impairs migration. In addition to regulating NSCLC cell migration by increasing β1-integrin expression, ROS may also affect migration by directly modulating integrin function [35, 36].
Taken together our findings suggest that the combined treatment with erlotinib and senicapoc might lead to a reduction of the tumor size by inducing apoptosis and to less metastatic events by impairing migration of NSCLC cancer cells (see Fig. 8). Our data provide more evidence to consider KCa3.1 channels as a therapeutic target in NSCLC, especially in advanced stages of tumor spreading and EGFR-TKI resistance. Importantly, safety of senicapoc was evidenced through a phase III clinical trial conducted for sickle cell disease and its repurposing for a phase II clinical trial for Alzheimer’s disease [37,38,39].
Methods
Cell culture
All NSCLC cell were kept at 37 °C in a humidified atmosphere containing 5% CO2. The highly aggressive A549-3R lung adenocarcinoma [40] cells were cultured in DMEM (Sigma-Aldrich, USA) supplemented with 10% fetal calf serum (FCS, Sigma Aldrich). H1975 cells, obtained from American Type Culture Collection were cultured in RPMI1640 supplemented with 10% FCS. H1975 cells are erlotinib-resistant because of a T790M mutation of the EGFR. Lastly, we obtained A549-3R cells that are partially resistant to erlotinib (A549res) as described in [17].
Bioinformatic correlation analysis
We used the Gene Expression Omnibus database (GEO; http://www.ncbi.nlm.nih.gov/geo) to compare microarray expression data of human erlotinib-sensitive with erlotinib-resistant NSCLC cell lines. The raw data of three data sets (GSE31625, GSE38310, GSE38404) were processed using the Bioconductor package in R (R Core team). We correlated the expression value of the KCNN4 gene (coding for KCa3.1 channels) with those of all the other genes present in the datasets by applying the Spearman correlation method. A cut-off of the correlation value (COR > 0.9) was applied. To create a short list of genes, a comparison was made between the highly correlated genes of the 3 datasets using the online software Venny 2.0. We performed a gene ontology analysis of the selected highly correlated genes using the online tool PANTHER (protein analysis through evolutionary relationships) version 11.1.
Caspase 3 activation measurements
We measured the activation of caspase 3 in living cells after 24 h treatment using the CaspGLOWTM Red Active Caspase-3 staining kit (BioVision Inc., USA). For each condition 3 × 105 cells were seeded in a glass-bottom dish (pre-coated at 37°C with 0.1% poly-L-lysin for 30 min) and cultured overnight; the day after, individual dishes were subjected to different treatments. After 24 h of treatment, the cells were washed with PBS and then stained with Red-DEVD-FMK at 37 °C in the dark for 1 h and further processed according to the manufacturer’s protocol. Cells were kept in 500 μL of the washing buffer and fluorescent images were recorded (546 nm excitation, 590 nm emission). Images from ten fields of view for each dish were acquired using a ZEISS microscope Axiovert 200 with a digital camera (Model 9.0, RT-SE-Spot, Visitron Systems, Germany) controlled by MetaVue software (Visitron). Cellular mean fluorecence intensities were determined with ImageJ.
Isolation of mitochondrial proteins
Mitochondria from human NSCLC adenocarcinoma tissue samples were isolated by suspending ~2 g of the tissue in 1.5 mL TES buffer (300 mM sucrose, 10 mM TES, 0.5 mM EGTA, pH 7.4). Suspended cells were fragmented with a Dounce homogenizer. Intact cells were pelleted by centrifugation at 1000 × g at 4 °C for 10 min, resuspended in TES buffer, homogenized and centrifuged again. The supernatants were pooled (200 µL aliquots were stored at −80 °C as “fraction 1”) and centrifuged at 6000 × g for 10 min at 4 °C. The resulting pellet was resuspended in 300 µl TES buffer (50 µL aliquots were stored at −80 °C as “fraction 2”). The remaining material was further purified on a Percoll gradient (60%, 30%, and 18% in TES buffer) by centrifugation at 8500 × g at 4 °C for 10 min. The floating material in the 18% layer contains ER and plasma membrane contaminants (denominated “fraction 3”). The upper interface contains purified mitochondria (denominated “m1”). Both fractions were collected and washed three times in TES buffer with centrifugation at 17,000 × g at 4 °C for 10 min.
We evaluated cytochrome C release from mitochondria to the cytosol of A549, A549res or H1975 cells that were grown in 100 mm tissue culture dishes to 90% confluence. After 5 h treatment, cells were harvested by trypsinization. The cellular pellet was then resuspended in 400 µL of buffer A (20 mM MOPS KOH pH7.4; sucrose 250 mM). 400 µL of buffer A supplemented with 1 mg/mL digitonin (#D5628, Sigma Aldrich) was added to the solution which was then centrifuged at 5.000 x g at 4 °C for 3 min. The supernatant contained the cytosolic fraction and was stored at -80°C, while the pellet was resuspended in 600 µL of buffer B (20 mM MOPS KOH pH 7.4; sucrose 250 mM; EDTA-N4 1 mM) for isolation of the mitochondrial fraction. After 5 min on ice the solution was centrifuged at 10.000 x g at 4 °C for 3 min; the pellet with the mitochondrial fraction was resuspended in buffer A and stored at -80 °C before further analysis.
Western blot analysis
Cells were lysed in RIPA buffer buffer (50 mM Tris, 150 mM NaCl, 0.1% SDS, 0.5% sodium deoxycholate, 1% NP-40 and protease inhibitors from Roche, Germany). Before gel-loading, the samples were mixed with a 5x SDS-Page sample buffer (0.225 M Tris-Cl pH 6.8, 50% glycerol, 5% SDS, 0.25 M DTT, and 0.05% bromphenol blue) and boiled at 95 °C for 5 min. After electrophoresis, proteins were transferred to a nitrocellulose membrane (Millipore, USA) using a Trans-blotTM SD (BioRad, USA). The membrane was blocked in Tris-buffered saline (TBS containing 5% skim milk and 0.05% Tween) for 1 h. We used the following antibodies: rabbit anti-KCa3.1 (1:500, #AV35098, Sigma-Aldrich), rabbit anti-BAK (1:200, #AHP2279, Bio-Rad), mouse anti α-tubulin (1:5000, #6199, Sigma-Aldrich), rabbit anti-vinculin (1:10.000, V9264, Sigma Aldrich), rabbit anti-ATP5a (1:500, AB14748, Abcam, UK) and rabbit anti-cytochrome C (1:300, 556433, BD Biosciences, USA), rabbit anti-β1 integrin (1:10,000, #AB1952, Millipore), rabbit anti-SAPK/JNK (1:500, #9252, Cell Signaling, USA), rabbit anti-Phospo-SAPK/JNK (1:200, #9251, Cell Signaling), rabbit anti-c-Jun (1:500, #9165, Cell Signaling), rabbit anti-Phospo-c-Jun (1:200, #91952, Cell Signaling) and rabbit anti-GAPDH (1:5000, #6199, Sigma-Aldrich) as primary antibodies, goat anti-mouse and goat anti-rabbit (1:10,000, Sigma-Aldrich) as secondary antibodies. Clarity Western ECL Substrate (BioRad) was used as chemiluminescence substrate. Signals were revealed using the ChemiDoc Gel Imaging System (BioRad) and quantified with Image Lab software (BioRad). Cytochrome C release into the cytoplasm is quantified as the ratio of cytoplasmic cytochrome C expression (cytochrome C band intensity normalized to that of the cytoplasmic marker vinculin) and mitochondrial cytochrome C expression (cytochrome C band intensity normalized to that of the mitochondrial marker ATP5a).
Mitochondrial membrane potential measurements
The mitochondrial membrane potential was measured using the cationic fluorescent dye Tetramethylrhodamine Methyl Ester (TMRM; #T668, ThermoFisher, USA). We seeded 7 × 104 A549, A549res or H1975 cells in glass coverslips (pre-coated with 0.1% poly-L-lysine at room temperature for 30 min) in 35 mm cell culture dishes and cultured overnight. On the following day, cells were incubated with 25 nM TMRM in HBSS at 37°C in the dark. After 20 min the TMRM concentration was reduced to 5 nM, and 4 µM cyclosporine H were added. The glass coverslips were placed in an environmental chamber (37 °C) on the stage of a Leica SP5 confocal microscope and images were acquired in 5 min intervals. The recording started with a 10 min control period. Thereafter, compounds were added at the indicated concentrations and images of the same visual field were taken in 5 min intervals for another 30 min. At the end of each experiment, 1 μM of the mitochondrial oxidative phosphorylation uncoupler, FCCP (carbonyl cyanide-p-trifluoromethoxyphenylhydrazone), was added and additional images were taken in 2.5 min intervals for a period of 5 min.
Superoxide release measurements
We seeded 7 × 104 A549, A549res or H1975 cells in glass-bottom 96-well cell imaging plates in their culture medium and incubated them overnight. The day after the medium was replaced with 100 µL HBSS solution containing 5 µM MitoSOX™ Red (#M36008, Thermo Fisher Scientific) and 2 nM Höchst 33342 (for nuclei staining; Thermo Fisher) and kept at 37 °C in the dark for 30 min. Thereafter, the HBSS solution was replaced with 100 µL HBSS without fluorescent dyes. The 96-well plate was placed on the Operetta CLS™ (PerkinElmer), and fluorescent images were acquired in 5 fields of view for each well in 5 min intervals. After 10 min, treatment compounds were added and cells were imaged every other 5 min for 50 min (each condition in duplicate). The acquired time-lapse stacks were processed and analyzed using Harmony® 4.8 high-content analysis software (PerkinElmer, USA).
Real-time ATP production assay
Total, mitochondrial (mitoATP) and glycolytic (glycoATP) ATP production rates, respectively, were indirectly determined in real time using the XF Real-Time ATP Rate Assay Kit with a Seahorse extracellular flux (XF) HS Mini Analyzer. The oxygen consumption rate (OCR) was quantified and ATP rates were calculated according to the manufacturer´s protocol. We seeded 1.5 × 104 A549, A549res or H1975 cells in standard culture medium and incubated at 37°C for 24 h. The day after the medium was replaced with Seahorse XF DMEM Medium, pH 7.4 with 10 mM of XF glucose, 1 mM of XF pyruvate, 2 mM of XF glutamine. OCR was measured at pre-set time intervals upon the automated additions of compounds (DMSO (1:1000), 10 µM senicapoc, 1.5 µM of oligomycin and at the end 0.5 µM rotenone + 0.5 µM antimycin A).
Cell- matrix adhesion assay with single cell force spectroscopy
Single cell force spectroscopy (SCFS) was performed with an atomic force microscope (AFM) in a similar way as described previously [16]. Cells were cultivated for 1 day and then treated with the desired compounds for 24 h. At the same time half of a 40 mm tissue culture dish (Techno Plastic Products AG) was coated with 100 μL of an ECM-like matrix of the following composition: RPMI (10.4 g/L), HEPES (10 mM), laminin (40 μg/mL; Sigma Aldrich), fibronectin (40 μg/μL, Becton Dickinson), collagen IV (5.4 μg/μL; Corning, USA), collagen III (12 μg/μL, Corning), rat tail collagen I (800 μg/mL, R&D system, USA) and H2O, adjusted to pH 7.4 with 1 M NaOH. For matrix polymerization the coated dish was left overnight at 37 °C and 5% CO2. On the day of the experiment cells were trypsinized (0.25% trypsin), resuspended in medium and left on ice until the experiment. At the same time, the other half of the 40 mm dish was coated with 0.5% gelatin at 37 °C for 30 min. Thereafter, the dish was washed with PBS and filled with 1 mL of Ringer’s solution (NaCl 122.5 mM, KCl 5.5 mM, glucose 5.5 mM, CaCl2 1.2 mM, MgCl2 0.8 mM, HEPES 10 mM, adjusted to pH 7.4 with 1 M NaOH). It was placed on the heated stage (37°C) of a ZEISS microscope Axiovert 135 M equipped with the CellHesion® 200 module (JPK Instruments, Germany).
Prior to all experiments, a tipless cantilever (#ARROW-TL1-50, NanoWorld AG) was incubated in PBS containing 1 mg/ml wheat germ agglutinin for 20 min (WGA; #L-9640, Sigma-Aldrich). The cantilever was then placed on the CellHesion® 200 module (AFM head) and placed over the 40 mm dish without cells for calibration. Spring constant (between 0.015 N/m and 0.06 N/m) and sensitivity were obtained by the CellHesion® software (JPK, SPM, version 4).
After calibration of the cantilever 10 µL of the cell suspension were seeded in the dish and a single cell was picked from the gelatine covered area of the dish with the WGA-coated cantilever (DFK31BF03, ImagingSource, Germany). The cantilever always approached a cell with a contact time of 10 s and a setpoint force of 2 nN, using a pulling length (z-length) of 100 µm and a velocity during approach and retraction of 5 µm/s. Thereafter, the cantilever with the bound cell was moved to the ECM-like matrix area. The bound cell was lowered onto the ECM-like matrix for 2 s with a setpoint force of 1nN. Then the cell was lifted back using the same pulling length and velocity values as for the picking procedure. The interaction forces between the cells and the matrix were recorded by CellHesion® software in a force-distance curve. For each experiment the attached cell was brought into contact with the ECM-like matrix for at least 5 times at five different positions. The maximal adhesion force (nN) was derived from the force-distance curves using the JPK Data Processing software (version 4.3.18).
Cell migration in a 3D matrix
Cell migration was recorded in a 3D matrix using an Ibidi μ-Slide I Luer. Cells were suspended at a final density of 1 × 106 cells/mL and supplemented with the desired treatment compounds at the indicated concentration. Then cells were mixed in a ratio of 1:4 with an ECM-like matrix of the following composition: RPMI (10.4 g/L), HEPES (10 mM), laminin (20 μg/mL; Sigma Aldrich), fibronectin (40 μg/μL, Becton Dickinson), collagen IV (5.4 μg/μL; Corning), collagen III (12 μg/μL, Corning), rat tail collagen I (1.600 μg/mL, R&D system) and H2O adjusted to pH 7.4 with 1 M NaOH. A final volume of 200 μL of the matrix/NSCLC cell suspension was loaded into an Ibidi μ-Slide I Luer and let polymerize at 37°C for 3 h (with 10 ng/mL EGF (Sigma Aldrich)). After polymerization, the migration experiment started. The focal plane was set in the middle of the μ-Slide. Images were acquired in 10 min intervals for 12 h using a ZEISS microscope Axiovert 40 C (Carl Zeiss, Germany), linked to a MicroCam SP 3.1 video camera (Bresser, Germany) controlled by the MicroCamLab software (Bresser). Migration of NSCLC cells was analyzed with Amira® software (ThermoFisher). Using a self-made JAVA program the positions of the centroids were determined for each time point. Migration speed and translocation were calculated as shown by Glaser et al. 2021 [17].
Statistical analysis
All data are shown as mean ± SEM. We used a two-tailed or multiple Student’s t-test for comparison between two groups. Mann–Whitney U-test was used for not normally distributed data. For comparing >2 groups we applied Ordinary 1-way ANOVA or Ordinary 2-way ANOVA, followed by Tukey’s or Bonferroni post hoc test. In both cases p-values < 0.05 were considered as statistically significant.
Data availability
All relevant data are available from the authors upon request.
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Acknowledgements
We acknowledge Ilka Neumann for performing the blots presented in Fig. 7E. The authors also gratefully acknowledge funding by the Deutsche Forschungsgemeinschaft (GRK 2515/1, Chembion).
Funding
This work was funded by the Deutsche Forschungsgemeinschaft (GRK 2515/1, Chembion). Open Access funding enabled and organized by Projekt DEAL.
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LMT, MG, EEB, MB, and AR performed and analyzed experiments. LMT, IS and AS designed and supervised the study. LMT and AS wrote the manuscript. SP and LA provided the tumor surgical samples. All authors edited the manuscript and approved the submitted version.
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The study was conducted in accordance with the Declaration of Helsinki. The protocol was approved by the Comitato Etico Regionale for clinical experimentation of Toscana region (Italy), Area Vasta Centro section, number: 20039_oss.
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Todesca, L.M., Gerke, M., Bulk, E.E. et al. Targeting KCa3.1 channels to overcome erlotinib resistance in non-small cell lung cancer cells. Cell Death Discov. 10, 2 (2024). https://doi.org/10.1038/s41420-023-01776-5
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DOI: https://doi.org/10.1038/s41420-023-01776-5
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