Abstract
Muscle cell differentiation is a complex process that is principally governed by related myogenic regulatory factors (MRFs). DNA methylation is considered to play an important role on the expression of MRF genes and on muscle cell differentiation. However, the roles of enzymes specifically in myogenesis are not fully understood. Here, we demonstrate that Tet2, a ten-eleven translocation (Tet) methylcytosine dioxygenase, exerts a role during skeletal myoblast differentiation. By using an immunostaining method, we found that the levels of 5-hydroxymethylcytosine (5-hmC) were much higher in differentiated myotubes than in undifferentiated C2C12 myoblasts. Both Tet1 and Tet2 expression were upregulated after differentiation induction of C2C12 myoblasts. Knockdown of Tet2, but not Tet1, significantly reduced the expression of myogenin as well as Myf6 and myomaker, and impaired myoblast differentiation. DNA demethylation of myogenin and myomaker promoters was negatively influenced by Tet2 knockdown as detected by bisulfite sequencing analysis. Furthermore, although vitamin C could promote genomic 5hmC generation, myogenic gene expression and myoblast differentiation, its effect was significantly attenuated by Tet2 knockdown. Taken together, these results indicate that Tet2 is involved in myoblast differentiation through promoting DNA demethylation and myogenic gene expression.
Similar content being viewed by others
Introduction
Muscle differentiation is a highly conserved process that occurs through the activation of quiescent satellite cells whose progeny proliferates, differentiates, and fuses to generate new myofibers. The course of skeletal myogenesis is precisely orchestrated by the myogenic regulatory factors (MRFs), such as MyoD, Myf5, myogenin, and Myf6 (also known as MRF4)1,2. Myf5 and MyoD are primary MRF proteins expressed in myoblast stage and are essential for skeletal muscle lineage determination, whereas myogenin and Myf6 are expressed upon myoblast differentiation into myotubes and probably collaborated with MyoD, control terminal muscle differentiation3,4,5,6,7,8,9. These myogenic factors cooperate with each other to regulate myogenic progress and promote the expression of some important genes for muscle cell function, such as myosin heavy chain (MyHC) and the recently discovered myomaker (also called Tmem8c)10,11.
In mammals, DNA cytosine methylation is one of the key epigenetic marks and has been suggested to play an important role on muscle development12. The initial correlation between DNA methylation and myogenesis is the observation that C3H10T1/2 embryonic fibroblasts were transformed into muscle cells by treatment with the DNA methyltransferase(DNMT) inhibitor 5-azacytidine13. This correlation has been further reinforced by the findings that promoters of MRF genes, MyoD and myogenin, were demethylated during myogenesis14,15,16. In particular, demethylation of myogenin promoter is highly correlated with transcriptional activation of this gene and with muscle terminal differentiation16,17,18. Furthermore, treatment of C2C12 myoblast cells with 5-azacytidine upregulated the expression of muscle related genes and enhanced the myotube maturation19. Although these studies have provided many insights of DNA methylation associated with myogenesis, the precise mechanism regulating demethylation during muscle differentiation in vivo is still poorly understood.
In recent years, dioxygenases of the ten-eleven translocation (Tet) family have been discovered to have the capacity of catalyzing the conversion of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC)20,21. Subsequent studies demonstrate that Tet proteins can further oxidize the 5hmC to 5-formylcytosine (5fC) and 5-carboxylcytosine (5caC), which can be excised by thymine-DNA glycosylase (TDG) to regenerate unmodified cytosines22,23,24. Tet protein-initiated oxidation of 5mC provides a solid pathway for active demethylation in vivo and has been shown to be associated with various biological and pathological processes during mammalian development25,26. However, it remains unknown whether or how Tet proteins act on skeletal myogenesis, although one recent report has found that the transcripts of two TET members, TET1 and TET2, were strongly upregulated in human skeletal myoblasts and myotubes27.
In this study, we have revealed, in murine C2C12 myoblasts, a well-established model system for skeletal myogenesis, that Tet2 exerts a role on skeletal muscle differentiation. We find that 5hmC is enriched in differentiated myotubes and Tet2 contributes to this event. Tet2-induced genome-wide 5hmC generation or specific gene demethylation is crucial for myoblast differentiation. We also show that vitamin C can promote myogenic differentiation, but its effect is dependent on Tet2-involved pathway. Our results provide evidence supporting a Tet protein-mediated active demethylation mechanism that regulates skeletal myogenesis.
Results
5-hmC and Tet expression are upregulated during C2C12 differentiation
To determine whether DNA demethylation occurs during myoblast differentiation, we detected the levels of 5hmC and 5mC in C2C12 cells 6 d after differentiation induction, by using immunostaining with antibodies against 5hmC and 5mC, respectively. Assessment by immunostaining for MyHC, a differentiation marker of skeletal muscle cells, indicated that approximately 30% of the cells were differentiated and many of them formed multinucleated myotubes. As shown in Fig. 1A, the nucleus in differentiated myotubes contained much higher levels of 5hmC than that in undifferentiated mononuclear cells, while 5mC levels were generally lower in differentiated cells as compared to the undifferentiated cells. Indeed, we observed gradual increase of 5hmC in cells with differentiation (Supplementary Figure S1A). These results suggest that the cells may have initiated demethylation during C2C12 differentiation.
As Tet proteins are the only known enzymes that convert 5mC to 5hmC, we examined the expression of all three members of Tet protein family during C2C12 differentiation. qRT-PCR analysis showed that both Tet1 and Tet2 transcripts were dramatically increased in the cells after differentiation induction for 2 d, while Tet3 expression was not significantly altered by differentiation and remained a very low level (Fig. 1B). In particular, Tet2 maintained a high level of expression during subsequent differentiation. Western blot analysis further confirmed the upregulation of Tet2 expression in differentiated cells (Fig. 1C). Immunostaining indicated that Tet2 protein was localized, in punctate patterns, in the nuclei of myoblasts and differentiated myotubes (Supplementary Figure S1B). These results suggest a possible role of Tet2 (and/or Tet1) on myoblast differentiation.
Knockdown of Tet2 decreases the expression of myoblast differentiation-associated genes
To investigate the roles of Tet1 and Tet2 on myoblast differentiation, we knocked down their expression in C2C12 by using short interfering RNAs (siRNA). When transfected into cells, these siRNAs specifically decreased mRNA levels of Tet1 or Tet2 to below 50% as compared with the control siRNA (Fig. 2A). We then examined the influence of Tet1- or Tet2-knockdown on expression of myogenesis-associated genes, including Myf5, MyoD, myogenin, Myf6 and myomaker. As shown in Fig. 2A, Tet1 knockdown only led to moderate decrease of Myf6 and myomaker transcripts and had no significant influence on Myf5, MyoD and myogenin. MyoD or Myf5 expression was also not changed by knockdown of Tet2, but the transcripts of myogenin, Myf6 and myomaker were dramatically downregulated in Tet2 knockdown cells (Fig. 2B). In normal C2C12 cells during differentiation, we observed a sharp rise of myogenin expression after 2 d of differentiation induction (Fig. 2C). In addition, Myf6 and myomaker expression were also gradually increased with C2C12 differentiation. This result supports the concept that myogenin, as well as Myf6 and myomaker, exert critical roles during skeletal muscle terminal differentiation4,5,6,10,11. As Tet2 knockdown significantly downregulated the expression of myoblast differentiation-associated genes, we speculated that Tet2 may be involved in myoblast differentiation through promoting the expression of these genes.
Tet2 knockdown impairs myoblast differentiation
Due to the inability of siRNAs to silence Tet2 expression for long time, we used short hairpin RNA (shRNA)-expressing plasmid to achieve prolonged silencing of Tet2 expression. As shown in Fig. 3A, the Tet2 transcripts were significantly reduced in cells transfected with the Tet2 shRNA plasmid (shTet2) as compared with the cells transfected with a control shRNA plasmid (shCtrl). Tet2 protein was also decreased and was less localized in shTet2-induced knockdown cells in comparison with the control cells (Fig. 3B and Supplementary Figure S2). Similar to siRNA-mediated Tet2 knockdown (Fig. 2B), knockdown by Tet2 shRNA significantly reduced the transcripts of myogenin, Myf6 and myomaker in C2C12 cells (Fig. 3A). After the cells were induced to differentiate, the expression of these myoblast differentiation-associated genes was persistently inhibited by Tet2 knockdown (Fig. 3A). Interestingly, although Tet2 knockdown did not affect the expression of Tet1 in myoblasts, it led to significant increase of Tet1 expression in differentiated cells. We then examined the influence of Tet2 knockdown on C2C12 differentiation. Immunostaining for MyHC indicated that the percentage of nuclei fused into myotubes was reduced from 34.5% in control cells to 11.7% in Tet2 knockdown cells (Fig. 3C). These results suggest that Tet2 has a role on myoblast differentiation.
Tet2 is involved in demethylation of myogenin and myomaker promoters
To determine the association between gene expression and Tet2-induced demethylation, we examined the methylation status of gene promoters by using bisulfite sequencing. A total of 9 CpG sites located in the region from −401 to −176 bp of myogenin promoter were analyzed. As shown in Fig. 4A, the methylation level of myogenin promoter was 28.3% in C2C12 cells transfected with control shRNA, but it was increased up to 51.1% in Tet2 knockdown cells. For myomaker, 5 CpG sites in the promoter region from −745 to −435 bp were examined. Similar to that in myogenin, Tet2 knockdown significantly increased myomaker promoter methylation, from 36.4% in control cells to 75% in Tet2 knockdown cells (Fig. 4C). However, 9 CpG sites tested for Myf6 promoter remained highly methylated in both Tet2 knockdown and control cells (Fig. 4B). These results suggest that Tet2 is involved in DNA demethylation of specific genes, and such demethylation may be correlated with the expression of relevant genes, such as myogenin and myomaker.
Knockdown of Tet2 decreases the effects of vitamin C in myoblast differentiation
It was reported recently that vitamin C can enhance the 5hmC generation through promoting Tet activity28,29,30,31. We tested the effect of vitamin C in C2C12 cells and demonstrated that vitamin C could promote 5hmC generation, myogenic gene expression and myoblast differentiation (Supplementary Figures S2 and 3). Based on these observations, we addressed whether vitamin C interplays with Tet2. C2C12 cells were transfected with shTet2 plasmid to knockdown the expression of Tet2. As expected, transfection with shTet2 resulted in significant 5hmC decrease when compared to the transfection with shCtrl plasmid (referred as to non-knockdown thereafter) (Fig. 5A and B), confirming that Tet2 is crucial for genome-wide 5hmC generation. Vitamin C induced the 5hmC level increase in Tet2 knockdown cells, but this effect was not comparable to its effect in non-knockdown cells (Fig. 5A and B). In Tet2 knockdown cells, the expression of myogenin, Myf6 and myomaker was dramatically decreased, even in the presence of vitamin C, while in non-knockdown cells, the expression of these genes was significantly increased by vitamin C (Fig. 5C). These results suggest that knockdown of Tet2 had impaired the effect of vitamin C on promoting the generation of 5hmC and the expression of myoblast differentiation-associated genes.
We next investigated the relationship between vitamin C and Tet2 in differentiated C2C12 cells. Tet2 knockdown cells and non-knockdown cells were cultured sequentially in growth medium (GM) and differentiation medium (DM), both supplemented with or without vitamin C. The differentiation was evaluated after 6 d of culture in DM. As shown in Fig. 6A and B, Tet2 knockdown dramatically decreased the efficiency of myotube formation, and vitamin C significantly enhanced myotube formation in both Tet2 knockdown cells and non-knockdown cells. However, the enhancement of myotube formation by vitamin C in Tet2 knockdown cells was attenuated as compared to that in non-knockdown cells, suggesting that Tet2 knockdown had impaired the effect of vitamin C on promoting myoblast differentiation. Furthermore, regardless of the presence of vitamin C, the expression of myogenin and myomaker was persistently inhibited in Tet2 knockdown cells after differentiation induction (Fig. 6C), which was similar to the situation in non-induction C2C12 cells (Fig. 5C). However, the Myf6 expression in Tet2 knockdown cells was not increased by vitamin C.
Discussion
In this study, we have suggested that Tet2 plays a role on differentiation of skeletal muscle cells. The recently discovered Tet family proteins have been shown to mediate DNA demethylation process by oxidizing 5mC to 5hmC. Tet proteins have important roles in epigenetic reprogramming in early embryos, primordial germ cells and embryonic stem cells25,26. For Tet2, null mutation studies have supported a role of Tet2 in haematopoiesis32,33,34,35, and more recently, Tet2 functions have been implicated in smooth and cardiac muscle36,37. Our study, for the first time, provides evidence that Tet2 is involved in skeletal myogenesis.
It is now known that 5hmC is a derivative from oxidized 5mC by Tet proteins and is a key intermediate in active demethylation pathway. Although 5hmC remains extremely low levels in most tissues, it is abundant in some cell types, for example mouse Purkinjie neurons and embryonic stem cells21,38. In the present study, we found that 5hmC was highly correlated with skeletal muscle differentiation in that the nuclei of differentiated myotubes contained much more content of 5hmC than those undifferentiated myoblast cells. Recent studies described a clear loss of genomic DNA methylation during skeletal muscle terminal differentiation27,39. Enzymatic assays for genomic 5hmC showed that 5hmC was more enriched in mature skeletal muscle as compared with myogenic progenitor cells including both myoblasts and myotubes27. In our study, we adopted immunostaining method to separately mark 5mC and 5hmC, and at the same time, to discriminate between differentiated myotubes and undifferentiated cells in the same cultures. Our results indicate a remarkable increase in DNA hydroxymethylation in myotubes as compared with myoblasts and suggest a more modest decrease in global DNA methylation during differentiation of myoblasts to myotubes.
Accumulating of 5hmC upon myoblast differentiation suggests that active demethylation probably occurs during this process. We found that the expression of Tet1 and Tet2, but not Tet3, was dramatically increased in C2C12 cells after induction of differentiation. Using microarray profiling analysis, Tsumagari et al. recently showed that skeletal muscle lineage cells, including both myoblasts and myotubes, contained much more Tet1 and Tet2 transcripts than most non-muscle cell strains27. Our study has further explored this observation in that induced differentiation led to further upregulation of Tet1 and Tet2 expression in C2C12 when compared with that prior to differentiation. This result suggests that Tet proteins are probably responsible for the formation of 5hmC in myotubes and may be involved in myoblast differentiation.
Skeletal muscle cell differentiation is principally regulated by several muscle-specific proteins, including MyoD, Myf5, myogenin, Myf6 and the recently discovered myomaker. It is shown that myogenin, as well as Myf6 and myomaker, are required for myoblast differentiation into myotubes4,5,6,10,11. Consistent with previous reports, we observed marked increase of the expression of myogenin, Myf6 and myomaker in C2C12 cells after differentiation induction. We have further demonstrated the role of Tet2 on regulating the expression of these genes. Knockdown of Tet2, but not Tet1, resulted in dramatic reduction of myogenin expression. Myogenin is considered to be a differentiation master that is essential for myoblast differentiation5,6,40. The expression of Myf6 and myomaker, the other two myogenic differentiation-associated genes, was also greatly downregulated by Tet2 knockdown. Furthermore, knockdown of Tet2 alone severely impaired the myoblast differentiation. While Tet1 is highly expressed in Tet2 knockdown cells, it seemed to have no or only have a partial compensation for the silence of Tet2, because the phenotype of knockdown cells was not completely rescued. Taken together these results, we can conclude that Tet2 has a critical role on in vitro myoblast differentiation through promoting the expression of differentiation-associated genes.
There are several evidences supporting the positive correlation between DNA demethylation and myogenin expression15,16,17,18. In particular, previous observations of the fast demethylation of myogenin 5′ flanking region upon differentiation induction have suggested that an active demethylation mechanism may exist in myoblast differentiation16,17. However, the enzymes involved in this process are poorly understood. In this study, using bisulfite sequencing analysis, we showed that knockdown of Tet2 in C2C12 cells significantly increased the methylation level of myogenin promoter sites. This result indicates that Tet2 has a function on myogenin promoter demethylation. Interestingly, Tet2 knockdown also led to increased methylation in myomaker promoter. However, due to the small number of CpG sites existing in myomaker promoter region, the correlation between DNA methylation and gene expression for myomaker still needs further investigation. In contrast to myogenin and myomaker, Myf6 promoter remained hypermethylation in both Tet2 knockdown cells and control cells. Thus, Myf6 expression might not be correlated with DNA methylation, as suggested by a previous study41. Downregulated expression of Myf6, as well as myomaker, in Tet2 knockdown cells, may be due to the reduction of myogenin expression, as myogenin has been shown to be a potential upstream activator for Myf6 and myomaker transcription10,11,42. In addition to myogenin, other factors might also regulate the expression of Myf6. For example, it is shown that MEF2 plays a role in activating the Myf6 promoter42.
Bisulfite sequencing analysis indicate that Tet2 induces the loss of both 5mC and 5hmC modifications in some specific gene sites, at least for the myogenin gene. However, the stably maintained 5hmC in differentiated myotubes implies that no further or complete demethylation happens in genome-global levels, since 5hmC is generally considered to be an intermediate in DNA demethylation. Two pathways, either “active” or “passive”, have been proposed to mediate complete demethylation following 5hmC oxidation25,26. One possible explanation for the accumulation of 5hmC in myotubes is that DNA replication-dependent passive demethylation is blocked due to the mitotic arrest of fused nuclei in myotubes. Complete demethylation of some subtle gene sites might occur through an active pathway, for example, thymine DNA glycosylase (TDG)-mediated base excision repair22,24. In addition, Dnmt family proteins may also have functions in DNA demethylation in the myogenic process, as we observed dynamic changes of Dnmt expression during myoblast differentiation (Supplementary Figure S5). Interestingly, Tet2 knockdown led to upregulated expression of both Dnmt1 and Dnmt3a, although the letter two displayed differential expression with the myoblast differentiation (Supplementary Figure S5). These observations suggest a link between Tet and Dnmt enzymes in regulating the demethylation of muscle-specific genes. Future investigation is required to address how these methyltransferases and demethylases coordinate the demethylation process during myoblast differentiation.
It is also possible that 5hmC per se might directly involve epigenetic regulation of gene functions43. In this regard, Terragni et al. recently suggested that high levels of 5hmC at Notch signaling genes in skeletal muscle may help fine-turn expression of the genes that is required for various muscle-specific activities, for example, regeneration of injured skeletal muscle44. The biological significance of 5hmC abundant in differentiated muscle cells needs to be elucidated in future studies. Based on our findings, we propose that Tet2 induces hydroxymethylation and promoter demethylation of some specific genes (eg. Myogenin), leading to the activation and expression of myoblast differentiation-associated genes, which consequently promotes the differentiation of myoblast into myotubes (Fig. 7).
Early studies have reported that vitamin C can promote muscle differentiation45. It was discovered until recently that vitamin C can act as a regulator of Tet activity to enhance the generation of 5hmC28,29,30,31. In this study, we have provided evidence linking these two vitamin C-mediated biological processes in myogenic cells. Vitamin C can promote the 5hmC generation, the expression of myogenic genes, and the differentiation of C2C12 myoblasts. The similar roles between vitamin C and Tet2 in regulating 5hmC generation and myoblast differentiation promoted us to speculate that the effect of vitamin C is dependent on Tet2-involved pathway. To this end, we examined the function of vitamin C in Tet2 knockdown cells. We showed that knockdown of Tet2 dramatically decreased the efficacy of vitamin C in enhancing 5hmC generation, myogenin/myomaker expression and myotube formation. These results demonstrate that Tet2 is implicated in vitamin C-regulated myogenic process. However, we found that vitamin C could partially rescue some phenotypes of Tet2 knockdown cells, such as slightly increasing 5hmC generation and myotube formation. This might be due to that vitamin C had enhanced the activity of the residual Tet2 protein that resulted from incomplete RNAi. Also possibly, other pathways in association with vitamin C might contribute, to some extents, to the myogenic process. Nevertheless, the fact that the effect of vitamin C in C2C12 cells was severely impaired by Tet2 knockdown support the role of Tet2 in myoblast differentiation.
In summary, our study demonstrates that genome-wide hydroxymethylation occurs during skeletal myogenic differentiation and Tet proteins act as important participators in this process. Tet2-mediated gene-specific demethylation is crucial for myoblast differentiation by regulating relevant gene expression and is also involved in regulatory pathway induced by other agents like vitamin C. Our study provides new insights for understanding the mechanism of skeletal muscle differentiation.
Methods
Culture, differentiation, and treatment of mouse C2C12 skeletal myoblast
Mouse skeletal muscle myoblasts C2C12 cells were purchased from CAS typical Culture Collections Committee cell library. C2C12 cells were cultured in growth medium (GM), Dulbecco’s Modified Eagle’s Medium (DMEM, Invitrogen) containing 10% (v/v) fetal bovine serum (FBS; HyClone), 100 units/ml penicillin and 100 μg/ml streptomycin sulfate (Invitrogen) at 37 °C in 5% CO2. To induce differentiation, when reached 90–100% of confluence, cells were shifted to differentiation medium (DM), DMEM supplemented with 2% (v/v) horse serum (HyClone) and antibiotics. Vitamin C (L-Ascorbic acid 2-phosphate, Sigma) was added into GM or DM according to the experimental design. The day of shift to DM was indicated as day 0 of differentiation.
RNA extraction and quantitative PCR analysis
Total RNA from C2C12 cells was isolated using the TRNzol Reagent (Tiangen Biotech) according to the standard protocol. RNA was reverse-transcribed to synthesize cDNA using FastQuant RT Kit (Tiangen Biotech) according to the manufacturer’s protocol. The cDNA was used as template for quantitative PCR (qPCR) using SuperReal PreMix (Tiangen Biotech). qPCR was performed on an ABI 7500 system (Applied Biosystems). Gene expression was normalized to Gapdh and compared with control group. Primers used for analysis are listed in Supplementary Table S1. All samples were analyzed in triplicates and all experiments were repeated for three times.
Gene silencing by siRNA or shRNA transfection
siGENOME Tet1 and Tet2 siRNAs and a non-targeting siRNA were purchased from Dharmacon. C2C12 cells were transfected with siRNAs using Lipofectamine 3000 (Invitrogen) according to the manufacturer’s protocol. Cells were cultured in 12-well plates and transfected with 30 pmol siRNA in complex with 10 μL of Lipofectamine 3000 dissolved in Opti-MEM solution (Gibco). After transfection for 6 h, the medium was replaced with fresh growth medium. Transfected cells were harvested 48 h later (for analysis of mRNA) or 72 h later (for analysis of protein). Each transfection experiment was repeated at least three times. To achieve persistent knockdown of Tet2, C2C12 cells was transfected with a Tet2 shRNA plasmid (shTet2) or a control scrambled shRNA plasmid (shCtrl) (Origene Technologies). Twenty-four hours after transfection, the cells were trypsinized, diluted and cultured in medium containing 2.5 μg/ml puromycin (Clontech) for 2 weeks for selection. Survived cells were used to subsequent experiments.
Immunofluorescence staining
Cells grown on 0.01 mg/ml poly-L-lysine (Sigma)-coated coverslips were fixed with 4% paraformaldehyde for 15 min, washed twice with PBST (PBS + 0.5% Tween 20) and permeated with 0.5% Triton X-100 for 25 min. Cells were treated with 2 M HCl for 20 min and then blocked in 1% BSA, 0.1% Triton X-100 in PBS for 1 h at 37 °C. Cell samples were incubated with relevant primary antibodies against myosin heavy chains (MF20, Developmental Studies Hybridoma Bank; 1:100 dilution), TET2 (Abcam, ab94580; 1:100 dilution), 5-hydroxymethylcytosine (ActiveMotif; 39769; 1:400 dilution), 5-methylcytosine (Eurogentec; BI-MECY-0100; 1:600 dilution), for 1 h at 37 °C. After extensive washes with PBST, cells were incubated with Dylight 488 or Dylight 549 -conjugated anti-rabbit IgG (Abbkine, A23220/A23320;1:200 dilution) or anti-mouse IgG (Abbkine, A23210/A23310; 1:200 dilution) antibodies. Cells were counterstained with 5 μg/ml 4, 6-diamidino-2-phenylindole (DAPI) in PBS and then mounted onto the slides in antifading solution containing 0.25% DABCO. Images were acquired using an Olympus BX51 epifluorescence microscope. Fluorescence intensity was measured with Image-Pro Plus 6.0 Software by manually outlining each nucleus in a given field.
Western blotting
To analyze the amount of Tet2 in cells, C2C12 cells at 0 and 6 d after differentiation induction were washed with PBS and lysed with lysis buffer (Beyotime). After being mixed with loading buffer (Applygen) and boiled for 10 min, denatured protein samples were separated by 8% SDS-PAGE gel and electrotransferred onto PVDF membranes. The membranes were blocked overnight at 4 °C in 5% milk in TBST buffer and then incubated for 2 h at room temperature with primary antibodies against TET2-specific (Abcam, ab94580; 1:500 dilution), myosin heavy chain (DSHB, MF20; 1:2000 dilution) or β-actin (Abcam, ab8227; 1:4000 dilution), followed by incubation with HRP-conjugated anti-rabbit IgG (Applygen; 1:3000 dilution) or anti-mouse IgG (Applygen; 1:4000 dilution) secondary antibodies for 2 h at room temperature. Immune complex were detected using Super ECL Kit (Applygen).
DNA methylation analysis
Genomic DNA was extracted from C2C12 cells using the Genomic DNA Clean & Concentrator kit (Zymo Research). Bisulfite treatment and recovery of samples were carried out with the EZ DNA Methylation-Gold Kit (Zymo Research) according to the manufacturer’s instructions. Bisulfite sequencing primers were designed with the online MethPrimer software (Supplementary Table S1). PCR was performed with the Hot-Start Ex Taq DNA Polymerase (TAKARA), and the products were gel selected, purified using the TIANgel Midi Purification Kit (Tiangen Biotech) and cloned through TA cloning using the pEASY-T1 Simple Cloning Kit (TransGen Biotech). At least 10 clones were sequenced and the results were analyzed with BiQ Analyzer software.
Statistical analysis
Statistical analyses were performed with GRAPHPAD PRISM 5 Software. Results are presented as means ± SEM. Data were analyzed by Student’s two-tailed t test. Differences were considered significant at three levels (*p < 0.05, **p < 0.01, ***p < 0.001).
Additional Information
How to cite this article: Zhong, X. et al. Ten-Eleven Translocation-2 (Tet2) Is Involved in Myogenic Differentiation of Skeletal Myoblast Cells in Vitro. Sci. Rep. 7, 43539; doi: 10.1038/srep43539 (2017).
Publisher's note: Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
References
Arnold, H. H. & Winter, B. Muscle differentiation: more complexity to the network of myogenic regulators. Curr. Opin. Genet. Dev. 8, 539–544 (1998).
Berkes, C. A. & Tapscott, S. J. MyoD and the transcriptional control of myogenesis. Semin. Cell Dev. Biol. 16, 585–595, doi: 10.1016/j.semcdb.2005.07.006 (2005).
Miner, J. H. & Wold, B. Herculin, a fourth member of the MyoD family of myogenic regulatory genes. Proc Natl Acad Sci USA 87, 1089–1093 (1990).
Bober, E. et al. The muscle regulatory gene, Myf-6, has a biphasic pattern of expression during early mouse development. J. Cell Biol. 113, 1255–1265 (1991).
Hasty, P. et al. Muscle deficiency and neonatal death in mice with a targeted mutation in the myogenin gene. Nature 364, 501–506, doi: 10.1038/364501a0 (1993).
Nabeshima, Y. et al. Myogenin gene disruption results in perinatal lethality because of severe muscle defect. Nature 364, 532–535, doi: 10.1038/364532a0 (1993).
Rudnicki, M. A. et al. MyoD or Myf-5 is required for the formation of skeletal muscle. Cell 75, 1351–1359 (1993).
Braun, T., Bober, E., Rudnicki, M. A., Jaenisch, R. & Arnold, H. H. MyoD expression marks the onset of skeletal myogenesis in Myf-5 mutant mice. Development 120, 3083–3092 (1994).
Megeney, L. A., Kablar, B., Garrett, K., Anderson, J. E. & Rudnicki, M. A. MyoD is required for myogenic stem cell function in adult skeletal muscle. Genes Dev. 10, 1173–1183, doi: 10.1101/gad.10.10.1173 (1996).
Millay, D. P. et al. Myomaker is a membrane activator of myoblast fusion and muscle formation. Nature 499, 301–305, doi: 10.1038/nature12343 (2013).
Millay, D. P., Sutherland, L. B., Bassel-Duby, R. & Olson, E. N. Myomaker is essential for muscle regeneration. Genes Dev. 28, 1641–1646, doi: 10.1101/gad.247205.114 (2014).
Carrio, E. & Suelves, M. DNA methylation dynamics in muscle development and disease. Front Aging Neurosci 7, 19, doi: 10.3389/fnagi.2015.00019 (2015).
Taylor, S. M. & Jones, P. A. Multiple new phenotypes induced in 10T1/2 and 3T3 cells treated with 5-azacytidine. Cell 17, 771–779 (1979).
Brunk, B. P., Goldhamer, D. J. & Emerson, C. P. Jr. Regulated demethylation of the myoD distal enhancer during skeletal myogenesis. Dev. Biol. 177, 490–503 (1996).
Scarpa, S., Lucarelli, M., Palitti, F., Carotti, D. & Strom, R. Simultaneous myogenin expression and overall DNA hypomethylation promote in vitro myoblast differentiation. Cell Growth Differ 7, 1051–1058 (1996).
Lucarelli, M., Fuso, A., Strom, R. & Scarpa, S. The dynamics of myogenin site-specific demethylation is strongly correlated with its expression and with muscle differentiation. J. Biol. Chem. 276, 7500–7506, doi: 10.1074/jbc.M008234200 (2001).
Fuso, A. et al. Early demethylation of non-CpG, CpC-rich, elements in the myogenin 5′-flanking region A priming effect on the spreading of active demethylation? Cell Cycle 9, 3965–3976, doi: 10.4161/cc.9.19.13193 (2010).
Palacios, D., Summerbell, D., Rigby, P. W. & Boyes, J. Interplay between DNA methylation and transcription factor availability: implications for developmental activation of the mouse Myogenin gene. Mol. Cell. Biol. 30, 3805–3815, doi: 10.1128/MCB.00050-10 (2010).
Hupkes, M. et al. Epigenetics: DNA demethylation promotes skeletal myotube maturation. FASEB J. 25, 3861–3872, doi: 10.1096/fj.11-186122 (2011).
Tahiliani, M. et al. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324, 930–935, doi: 10.1126/science.1170116 (2009).
Ito, S. et al. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466, 1129–1133, doi: 10.1038/nature09303 (2010).
He, Y. F. et al. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333, 1303–1307, doi: 10.1126/science.1210944 (2011).
Ito, S. et al. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333, 1300–1303, doi: 10.1126/science.1210597 (2011).
Maiti, A. & Drohat, A. C. Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites. J. Biol. Chem. 286, 35334–35338, doi: 10.1074/jbc.C111.284620 (2011).
Kohli, R. M. & Zhang, Y. TET enzymes, TDG and the dynamics of DNA demethylation. Nature 502, 472–479, doi: 10.1038/nature12750 (2013).
Pastor, W. A., Aravind, L. & Rao, A. TETonic shift: biological roles of TET proteins in DNA demethylation and transcription. Nat. Rev. Mol. Cell Biol. 14, 341–356, doi: 10.1038/nrm3589 (2013).
Tsumagari, K. et al. Early de novo DNA methylation and prolonged demethylation in the muscle lineage. Epigenetics 8, 317–332, doi: 10.4161/epi.23989 (2013).
Blaschke, K. et al. Vitamin C induces Tet-dependent DNA demethylation and a blastocyst-like state in ES cells. Nature 500, 222–226, doi: 10.1038/nature12362 (2013).
Chen, J. et al. Vitamin C modulates TET1 function during somatic cell reprogramming. Nat. Genet. 45, 1504–1509, doi: 10.1038/ng.2807 (2013).
Minor, E. A., Court, B. L., Young, J. I. & Wang, G. Ascorbate induces ten-eleven translocation (Tet) methylcytosine dioxygenase-mediated generation of 5-hydroxymethylcytosine. J. Biol. Chem. 288, 13669–13674, doi: 10.1074/jbc.C113.464800 (2013).
Yin, R. et al. Ascorbic acid enhances Tet-mediated 5-methylcytosine oxidation and promotes DNA demethylation in mammals. J. Am. Chem. Soc. 135, 10396–10403, doi: 10.1021/ja4028346 (2013).
Jankowska, A. M. et al. Loss of heterozygosity 4q24 and TET2 mutations associated with myelodysplastic/myeloproliferative neoplasms. Blood 113, 6403–6410, doi: 10.1182/blood-2009-02-205690 (2009).
Li, Z. et al. Deletion of Tet2 in mice leads to dysregulated hematopoietic stem cells and subsequent development of myeloid malignancies. Blood 118, 4509–4518, doi: 10.1182/blood-2010-12-325241 (2011).
Moran-Crusio, K. et al. Tet2 loss leads to increased hematopoietic stem cell self-renewal and myeloid transformation. Cancer Cell 20, 11–24, doi: 10.1016/j.ccr.2011.06.001 (2011).
Quivoron, C. et al. TET2 inactivation results in pleiotropic hematopoietic abnormalities in mouse and is a recurrent event during human lymphomagenesis. Cancer Cell 20, 25–38, doi: 10.1016/j.ccr.2011.06.003 (2011).
Liu, R. et al. Ten-eleven translocation-2 (TET2) is a master regulator of smooth muscle cell plasticity. Circulation 128, 2047–2057, doi: 10.1161/CIRCULATIONAHA.113.002887 (2013).
Greco, C. M. et al. DNA hydroxymethylation controls cardiomyocyte gene expression in development and hypertrophy. Nat. Commun. 7, 12418, doi: 10.1038/ncomms12418 (2016).
Kriaucionis, S. & Heintz, N. The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain. Science 324, 929–930, doi: 10.1126/science.1169786 (2009).
Carrio, E. et al. Deconstruction of DNA methylation patterns during myogenesis reveals specific epigenetic events in the establishment of the skeletal muscle lineage. Stem Cells 33, 2025–2036, doi: 10.1002/stem.1998 (2015).
Venuti, J. M., Morris, J. H., Vivian, J. L., Olson, E. N. & Klein, W. H. Myogenin is required for late but not early aspects of myogenesis during mouse development. J. Cell Biol. 128, 563–576 (1995).
Fan, H. et al. Molecular mechanism underlying the differential MYF6 expression in postnatal skeletal muscle of Duroc and Pietrain breeds. Gene 486, 8–14, doi: 10.1016/j.gene.2011.06.031 (2011).
Naidu, P. S., Ludolph, D. C., To, R. Q., Hinterberger, T. J. & Konieczny, S. F. Myogenin and MEF2 function synergistically to activate the MRF4 promoter during myogenesis. Mol. Cell. Biol. 15, 2707–2718 (1995).
Kriukiene, E., Liutkeviciute, Z. & Klimasauskas, S. 5-Hydroxymethylcytosine–the elusive epigenetic mark in mammalian DNA. Chem Soc Rev 41, 6916–6930, doi: 10.1039/c2cs35104h (2012).
Terragni, J. et al. Notch signaling genes: myogenic DNA hypomethylation and 5-hydroxymethylcytosine. Epigenetics 9, 842–850, doi: 10.4161/epi.28597 (2014).
Mitsumoto, Y., Liu, Z. & Klip, A. A long-lasting vitamin C derivative, ascorbic acid 2-phosphate, increases myogenin gene expression and promotes differentiation in L6 muscle cells. Biochem. Biophys. Res. Commun. 199, 394–402, doi: 10.1006/bbrc.1994.1242 (1994).
Acknowledgements
This research was supported by the National Natural Science Foundation of China (Grant No. 31172208) and the Earmarked Fund for Modern Agro-industry Technology Research System (Grant No. CARS-40-08).
Author information
Authors and Affiliations
Contributions
J.H. designed the research. X.Z., Q.W., J.L., Y.Z. did the experiments. X.Z., Q.W., J.H. and X.A. analysed the data. J.H. and X.Z. wrote the paper. All authors reviewed the manuscript.
Corresponding author
Ethics declarations
Competing interests
The authors declare no competing financial interests.
Supplementary information
Rights and permissions
This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
About this article
Cite this article
Zhong, X., Wang, QQ., Li, JW. et al. Ten-Eleven Translocation-2 (Tet2) Is Involved in Myogenic Differentiation of Skeletal Myoblast Cells in Vitro. Sci Rep 7, 43539 (2017). https://doi.org/10.1038/srep43539
Received:
Accepted:
Published:
DOI: https://doi.org/10.1038/srep43539
- Springer Nature Limited
This article is cited by
-
Epigenetic control of skeletal muscle atrophy
Cellular & Molecular Biology Letters (2024)
-
Disturbance of calcium homeostasis and myogenesis caused by TET2 deletion in muscle stem cells
Cell Death Discovery (2022)
-
Isoform-specific and ubiquitination dependent recruitment of Tet1 to replicating heterochromatin modulates methylcytosine oxidation
Nature Communications (2022)
-
Epigenetic regulation of satellite cell fate during skeletal muscle regeneration
Skeletal Muscle (2021)
-
Muscle regeneration controlled by a designated DNA dioxygenase
Cell Death & Disease (2021)